LOC122351107


Basic Information

Item Value
gene id LOC122351107
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8253538 ~ 8269217 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251685.1
ACAACGGGGTAACAGGAAATACTGAGTAAAACTGAGAGAAGAAACACCacttttaagtacattttttttgtattttatttataaatttatggTCATGTCGTTTGCATCGGAGTCTTTTCTTGTGATCGCCGTCGTTGCCGTGCTAACAACAGCCCTGCCTACATTTGGATGTGGTGTCCTTCCAGACTTCATAGTGACCTCTAACTGTGCAATATTCACTGTCTCTCAGATACATTCAGCTGGTTCCCTCCACAGCTTTAATGTAGAGGATTCTAAGAAGAAATGACCAGACAAAAGTGCCTGTGAGACACTGCTTCATTTGACGAGTGGCGCTGTGATGGCCACGCTTCAAAACACCacttttatgtgtgtattttctcttttcaaATCTTACGTTTCAGGAGAAAGACCACAGGCAATTGAAAACATACTGAGGGCCCTTAGGCTGATCACATGTTCTCTTCCTATCATAAACGGGAAGCAGTAACGCTGGAAGGAAACTCATTTAGCATGTGGATATCATGCACTCTTTA
>XR_006251686.1
ACAACGGGGTAACAGGAAATACTGAGTAAAACTGAGAGAAGAAACACCacttttaagtacattttttttgtattttatttataaatttatggTCATGTCGTTTGCATCGGAGTCTTTTCTTGTGATCGCCGTCGTTGCCGTGCTAACAACAGCCCTGCCTACATTTGGATGTGGTGTCCTTCCAGACTTCATAGTGACCTCTAACTGTGCAATATTCACTGTCTCTCAGTGTGTGCTCTCTGCCCCATCAGGACTTCCTGTGTGGGAGGAAGGTGTATGTGCCAGATTCTAAGTGCATTAGAGAGATTTTGCCTCCGAGGCTTGGACCAGGAACAGCCACGCCTGACCTCCACCTTTGCGGAATGGAAGACAAAGAGAGTAAAAGAGGCAAAATAGTACCAGCCTCGAGGgagatcttttttatttttcaatagtGCCTGTTTATTGGTCACTACATTAAAGTTAACTAAAATGATTACAGTAAAGTAACTAGGATAACTTGTAACATCTGTGTATTTCTTTGAGTGTTCCTCATTTGTCAATCATTATGCATAATCGTATTAAAGTTAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251685.1 False 533 lncRNA 0.41 3 8255469 8269217
XR_006251686.1 True 572 lncRNA 0.40 3 8253538 8269217

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4,LOC107603279,LOC106613892 coding downstream 116263 8036622 ~ 8137275 (-)
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding downstream 490329 7750415 ~ 7763209 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding downstream 513082 7688861 ~ 7740456 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding downstream 601232 7594983 ~ 7652306 (-)
LOC122350884 NA coding downstream 870726 7380546 ~ 7382812 (-)
dmrta2 dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895 coding upstream 3267 8272484 ~ 8275399 (-)
faf1 faf1,LOC107743872,LOC107707577 coding upstream 16014 8285231 ~ 8346021 (-)
rnf11b rnf11b,rnf11,LOC107599796 coding upstream 87630 8356847 ~ 8371737 (-)
ttc39a ttc39a,LOC107657886,LOC107752432,LOC107599797,LOC107743871,LOC107548186,LOC107699571 coding upstream 103440 8372657 ~ 8391494 (-)
calr calr,LOC107548191,LOC107743868,LOC107699587,LOC107657889,LOC107752434,LOC108265943 coding upstream 148213 8417430 ~ 8422195 (-)
G61967 NA non-coding downstream 279518 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 298896 7951561 ~ 7954642 (-)
G61965 NA non-coding downstream 474974 7749703 ~ 7778564 (-)
G61959 NA non-coding downstream 590279 7662217 ~ 7663259 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding downstream 705215 7545810 ~ 7548323 (-)
G62076 NA non-coding upstream 158068 8427285 ~ 8430135 (-)
G62120 NA non-coding upstream 238674 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 442820 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 644265 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 649541 8918758 ~ 8920904 (-)
LOC122350139 elavl4 other downstream 20764 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 565976 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1150545 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1197109 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 1436791 6814471 ~ 6816747 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 123128 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 378053 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 383087 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 988026 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1431177 9700394 ~ 9708621 (-)

Expression


Co-expression Network