Gene
RNA
| Item | Value |
|---|---|
| gene id | G31865 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 12192130 ~ 12197418 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU36123 | False | 1135 | TUCP | 0.34 | 8 | 12192130 | 12195147 |
| TU36121 | True | 858 | lncRNA | 0.58 | 4 | 12193952 | 12197418 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_12033980_12034384 | NA | coding | upstream | 159550 | 12033656 ~ 12034402 (+) |
| CI01000004_11897082_11898506 | MYCB | coding | upstream | 294737 | 11896232 ~ 11899215 (+) |
| CI01000004_11863724_11890961 | NA | coding | upstream | 302838 | 11863724 ~ 11891114 (+) |
| CI01000004_11776595_11786233 | STARD3NL | coding | upstream | 407035 | 11776419 ~ 11786917 (+) |
| CI01000004_11771176_11773391 | EPDR1 | coding | upstream | 420436 | 11771089 ~ 11773516 (+) |
| CI01000004_12222833_12223126 | NA | coding | downstream | 24508 | 12221926 ~ 12223244 (+) |
| CI01000004_12331486_12332789 | NA | coding | downstream | 133422 | 12330840 ~ 12332997 (+) |
| CI01000004_12353073_12362622 | KLHL18 | coding | downstream | 155542 | 12352960 ~ 12362716 (+) |
| CI01000004_12362858_12363136 | NA | coding | downstream | 165389 | 12362807 ~ 12363136 (+) |
| CI01000004_12376518_12381495 | NA | coding | downstream | 179006 | 12376424 ~ 12381705 (+) |
| G31887 | NA | non-coding | upstream | 5257 | 12188353 ~ 12188695 (+) |
| G31886 | NA | non-coding | upstream | 7558 | 12186024 ~ 12186394 (+) |
| G31885 | NA | non-coding | upstream | 9199 | 12184284 ~ 12184753 (+) |
| G31800 | NA | non-coding | upstream | 11067 | 12182432 ~ 12182885 (+) |
| G31789 | NA | non-coding | upstream | 11947 | 12179891 ~ 12182005 (+) |
| G31862 | NA | non-coding | downstream | 23243 | 12220661 ~ 12257141 (+) |
| G31864 | NA | non-coding | downstream | 42389 | 12239807 ~ 12292695 (+) |
| G31881 | NA | non-coding | downstream | 72415 | 12269833 ~ 12270489 (+) |
| G31863 | NA | non-coding | downstream | 81462 | 12278880 ~ 12297009 (+) |
| G31874 | NA | non-coding | downstream | 105201 | 12302619 ~ 12304869 (+) |
| CI01000004_11666900_11667179 | NA | other | upstream | 526293 | 11666900 ~ 11667659 (+) |
| G31710 | NA | other | upstream | 551552 | 11637251 ~ 11642400 (+) |
| G30797 | NA | other | upstream | 1696164 | 10497376 ~ 10497788 (+) |
| CI01000004_08976512_08980033 | TTPA | other | upstream | 3212968 | 8976254 ~ 8980984 (+) |
| G28859 | NA | other | upstream | 3594349 | 8599235 ~ 8599603 (+) |
| CI01000004_12646972_12652534 | NA | other | downstream | 445336 | 12646838 ~ 12652570 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | downstream | 1826129 | 14035393 ~ 14039142 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | downstream | 2893826 | 15091200 ~ 15097173 (+) |
| G34220 | NA | other | downstream | 3741939 | 15939357 ~ 15939950 (+) |
| G33815 | NA | other | downstream | 3865997 | 16063415 ~ 16066464 (+) |
