G137831


Basic Information

Item Value
gene id G137831
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1916147 ~ 1918411 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186500
ACAGAAGCTCCCCAGATGAGATGATTTCAGCTCCAGCAGGGCTTCAGAGaatcggaggaggaggagggtgttattattattattagtctgtgtctctgtgACTCTGGGTTGGGAAGCTGATGGAAGTTTGGAAAGGTTTCTGAATCTCTCCTCTAAAAGAAGTGTTTGTGGACTCTGCACGGAGGTGGAGAAGATAAAGGCCGGATTGCACCGAGACGAGGAAAAGGCAAACACGGCTGAGACTGACAGCTTCAGCCCGGAGCTGTCAGCGGAGACGGAGAGCTGACTGAAAGATTCTTCACACCTCTCGACTTCTCGTGCAATTTCGCCGAGACTGACGGAGGAGGATGAACTCCAAAAAGCCAGAGCGCTCCAGATGCGGCTGAGGTGCATCAGACAAGAAACGAGGCGGATTACTGATGCGTTTTGAACAGTCTGTGAGGCGTGTTGCTGCAACACTGACTGTGGTAATTGCGAGCAGGGGCTGATCACCAGATTATTGATCAGTCGGTTGTCGCATTTTGAGCGGAATTTTAATTCCAGAAAGGACGGAAAGCAGACTTTAAACCAGGTTTTTTTTAGCTGCTCTTGACAAATTCCAGACATAGACGACGTAGACGATGCAGACGATGCAGATGAGCAGATGTGATGGATCATCGGACGCATCATCCTCCCTCGTGACTGTGGAGTCTGTGGAGAGAGAGGTTATTATGTCTAATCCTCATCACTCATCACTCGTGCAGCGTGTCTGCAGGAGCGTCTGCTGGAGaacgaaacaaacaaaaaaaaaagcctctgGTTAAAGTCTAGGAaaagaagagataaaaaaagagacagaaagccaaagaaagaaagaaagagagagagagagagaaagttgtTATAAAGAGAATCTGATGGTTTAGTAAGATGTGAAGATATGAGAGCGTGTTTGAGAGAACGTCAGTGTAAAAGCTTCTGACTAAAGAAATGCAAGACGGAGGGCTTTAATGTtaatgaaaggaaaaaagaaaatggaatTCCTGAGAGGTGACGTGAGTGTGAgaattttaaagtgtgtgttagaatgagacaaaataaaaaagctttagacacttttaaaaagaacaagaacacTCCACAGGTGtgaataggaaaaaaatatacaataaactaCAAATTTAAAGGGGAATTTTAGAATACAGAATGGAAGCAGGGGTCAGTTTTCATATATAGccaatattatatttactgtccAAACCCtttttgagagttcagaaatcaatatttggtggaataaccctggttgggttttaatcacagtttttttcatgcatcttggcatcatgttgttttcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaagtcaagcagtttatatatcttcctcttgattatatttcggaggttttcaatttggttaaatcaaagaaaatcatcatttttaagtgctctcttaatttgtttaaaGCTGTATAtacctgtttaaatatatatatatataaagaaatacaaaaataaacaccaAAGTCCCACAATCTGGCAGGGCACAGCAGTGCTCTTACACATAGGGGGGAAAGAAACACCAAAATAGGCCAAATCtaacagtttatatatttaaatctaGTTAATCTAGAATCACCATAATATTCTGATGATGTCTGATGCTTTACATACCAAtttataaaccaaaaaaatgctttttatttttttggggtcactaaaattactcaaatgtatttaaaaacattttagctaAATAACTCAGTAATGAAGAAAATGATGTTCATAAATTTTATAGTAATAAATGAAGCCACAACATTTTCTTCCCAGTATCAGAGGGAAATGACTAATGACTAATAGCCTGTACTGCTGGTGCTCAGATTTGATCCTCTATTACAGAACCAGTACTGTAGGTTTGCattgagtttttgagtttttttttttgttttgtttttttgggaggGAAAAACACAATTGTCTGTACTgctcgtttgtttgtttgtttgtttgttggtatGTTTTTTAGCGAATGTACAGAATCTTGTCATTTCCATCCACTGTTTACAGCCACTCTCTCATTTTTAATACAGTCACACTAATGTTCACTATTCAGATTCAGAAATGCCATAGCTATTtgattaattctttttttttatttctattattct
>TU186501
ACAGAAGCTCCCCAGATGAGATGATTTCAGCTCCAGCAGGGCTTCAGAGaatcggaggaggaggagggtgttattattattattagtctgtgtctctgtgACTCTGGGTTGGGAAGCTGATGGAAGTTTGGAAAGGTTTCTGAATCTCTCCTCTAAAAGAAGTGTTTGTGGACTCTGCACGGAGGTGGAGAAGATAAAGGCCGGATTGCACCGAGACGAGGAAAAGGCAAACACGGCTGAGACTGACAGCTTCAGCCCGGAGCTGTCAGCGGAGACGGAGAGCTGACTGAAAGATTCTTCACACCTCTCGACTTCTCGTGCAATTTCGCCGAGACTGACGGAGGAGGATGAACTCCAAAAAGCCAGAGCGCTCCAGATGCGGCTGAGGTGCATCAGACAAGAAACGAGGCGGATTACTGATGCGTTTTGAACAGTCTGTGAGGCGTGTTGCTGCAACACTGACTGTGGTAATTGCGAGCAGGGGCTGATCACCAGATTATTGATCAGTCGGTTGTCGCATTTTGAGCGGAATTTTAATTCCAGAAAGGACGGAAAGCAGACTTTAAACCAGGTTTTTTTTAGCTGCTCTTGACAAATTCCAGACATAGACGACGTAGACGATGCAGACGATGCAGATGAGCAGATGTGATGGATCATCGGACGCATCATCCTCCCTCGTGACTGTGGAGTCTGTGGAGAGAGAGGTTATTATGTCTAATCCTCATCACTCATCACTCGTGCAGCGTGTCTGCAGGAGCGTCTGCTGGAGaacgaaacaaacaaaaaaaaaagcctctgGTTAAAGTCTAGGAaaagaagagataaaaaaagagacagaaagccaaagaaagaaagaaagagagagagagagagaaagttgtTATAAAGAGAATCTGATGGTTTAGTAAGATGTGAAGATATGAGAGCGTGTTTGAGAGAACGTCAGTGTAAAAGCTTCTGACTAAAGAAATGCAAGACGGAGGGCTTTAATGTtaatgaaaggaaaaaagaaaatggaatTCCTGAGAGGTGACGTGAGTGTGAgaattttaaagtgtgtgttagaatgagacaaaataaaaaagctttagacacttttaaaaagaacaagaacacTCCACAGGTGtgaataggaaaaaaatatacaataaactaCAAATTTAAAGGGGAATTTTAGAATACAGAATGGAAGCAGGGGTCAGTTTTCATATATAGccaatattatatttactgtccAAACCCtttttgagagttcagaaatcaatatttggtggaataaccctggttgggttttaatcacagtttttttcatgcatcttggcatcatgttgttttcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaagtcaagcagtttatatatcttcctcttgattatatttcggaggttttcaatttggttaaatcaaagaaaatcatcatttttaagtgctctcttaatttgtttaaaGCTGTATAtacctgtttaaatatatatatatatatataaagaaatacaaaaataaacaccaAAGTCCCACAATCTGGCAGGGCACAGCAGTGCTCTTACACATAGGGGGGAAAGAAACACCAAAATAGGCCAAATCtaacagtttatatatttaaatctaGTTAATCTAGAATCACCATAATATTCTGATGATGTCTGATGCTTTACATACCAAtttataaaccaaaaaaatgctttttatttttttggggtcactaaaattactcaaatgtatttaaaaacattttagctaAATAACTCAGTAATGAAGAAAATGATGTTCATAAATTTTATAGTAATAAATGAAGCCACAACATTTTCTTCCCAGTATCAGAGGGAAATGACTAATGACTAATAGCCTGTACTGCTGGTGCTCAGATTTGATCCTCTATTACAGAACCAGTACTGTAGGTTTGCattgagtttttgagtttttttttttgttttgtttttttgggaggGAAAAACACAATTGTCTGTACTgctcgtttgtttgtttgtttgtttgttggtatGTTTTTTAGCGAATGTACAGAATCTTGTCATTTCCATCCACTGTTTACAGCCACTCTCTCATTTTTAATACAGTCACACTAATGTTCACTATTCAGATTCAGAAATGCCATAGCTATTtgattaattctttttttttatttctattattct

Function

NR:

description
PREDICTED: palladin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186500 False 2204 lncRNA 0.38 2 1916147 1918411
TU186501 True 2208 lncRNA 0.38 2 1916147 1918411

Neighbor

gene id symbol gene type direction distance location
LOC103042278 NA coding upstream 1128 1869474 ~ 1915019 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding upstream 55632 1855297 ~ 1860515 (+)
LOC103043726 LOC103043726,LOC105899208 coding upstream 98935 1810725 ~ 1817212 (+)
tsc22d2 NA coding upstream 113828 1777225 ~ 1802319 (+)
LOC111194259 NA coding upstream 169909 1740171 ~ 1746238 (+)
dpp6 LOC108430761,LOC108267703 coding downstream 183810 2102221 ~ 2230065 (+)
LOC103042593 LOC108430758 coding downstream 403627 2322038 ~ 2362870 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding downstream 477546 2395957 ~ 2405369 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding downstream 504497 2422908 ~ 2431028 (+)
LOC103041271 LOC108430753 coding downstream 546920 2465331 ~ 2473513 (+)
G137898 NA non-coding upstream 36755 1879072 ~ 1879392 (+)
G137889 NA non-coding upstream 106535 1808205 ~ 1809612 (+)
G137890 NA non-coding upstream 109967 1804927 ~ 1806180 (+)
G137827 pfn2,pfn2l,LOC107681776 non-coding upstream 145957 1762038 ~ 1770190 (+)
G137880 NA non-coding upstream 195193 1720742 ~ 1720954 (+)
G137902 NA non-coding downstream 3142 1921553 ~ 1924855 (+)
G137917 LOC108430762,LOC108267465 non-coding downstream 69403 1987814 ~ 1988466 (+)
G137930 NA non-coding downstream 106782 2025193 ~ 2028808 (+)
G137943 LOC108430760 non-coding downstream 288956 2207367 ~ 2237690 (+)
G137951 arhgap21b,LOC108267702 non-coding downstream 326105 2244516 ~ 2245661 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 64834 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 416191 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 876177 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 927509 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 1134951 762715 ~ 781196 (+)
G137929 NA other downstream 104344 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 982064 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1163645 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1197009 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1883442 3801853 ~ 3839372 (+)

Expression


Co-expression Network