G137972


Basic Information

Item Value
gene id G137972
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2386510 ~ 2480525 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186677
ttttggagaactttatgctttacactcctggtgcaaaaaattaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagagttttttaatttgctaaaatcaaagacactcttaatttttaggtgctctaattttttcagagctgtagatcaCATTTGCTATATAGTGAACTGACACTGGATCAACCTAACAACAAACTTTCTTAAAATCTTTGTTTGTGCAGTTTTGAGAACATCTAATATAACACCACTTTCACTGCATTATGTTATACACTGGAAATTCTAGTGTACATCATCTATACACTACATTTTGTGATGCATTATGGGTGTTTGGTAGTGAACTATATAGGGAATAGTGCACTACTTCTTCGATGGGGAGTAAATTCTGAACACAGTTTATATTTTCCTTATGCTGGAacatctccattcaaaatgctttagtttagtccaagactaggctcaATCCTTGTCTGAAAAACTCCccatttaatttgttattttgagtAATTTTGGCGTAACATCATCTAGCAAATAAGCCCCATTCATTTATCAGCTTTAAAAAATCAGCCAGGCTCTAGGTTGGGCTAAACTAAAAGACGTGAATAAATAGCTGCACGGAATAGGGGCATGTGggtgtgtttctttttagcctaaaagtcagtttttttattattattaaatcagattaaagaCTGGTTTGCAAGTTAACTGACAGAAATTGTGTTCAGCAGAAGGACCTTAaagtcaatatatatatatatattttactaatttattttaacctcttgagaccctgcatcCTTATATGGGAATATAaggatatttatattatatttccgCTACTTTGCACTATAATcctattttttgtaaaatgttaaatatcatTGGCCTCATTTTGAGACACTGCCTATATCATCtattggtcacatgacaacattaatGTCATCTGATTGGAAATTGTTGAAAGATGTTGTGAATCACAGTCAAacgtttctacagccagtccagataGAAATACCAGACCAGGTAAAAagaattcttttctttttttaagttaattttgtgtttaaaactaatttattcacttactgtagaaagctaacattctgtttttggactaattgagtcattctgatcccaaatgtcaagaatcatttttaaatgtacaaaaaaaaacaaaactaatgtCCCCCGTATGAgggctgtgttcttttttttaggtATCAGGAGGTAAAAAATTACTGTTAGATGTTTTTCCAAGCCCTGCAGACCCAGCAAGCCACAAATGGGTTGAACAAAAAGCCTCACCATGGGTTATTGTTAGCTAATTGTTAGCTATCTAAAGCAGCTAGCAGCTAGCACTGTTGGCTCATCCAAAGAGGCAGCCGGTTAGCTATCCAGCATGAAAACCTAATAATAAATCATCTGTGTGCTGCTAAGTTGTTGTGCTACTGACTGTACTACTTTCTTCTTATcatcagtgcttttttttttttttttcaaaaaaattgaattaacATATTTCCCCATGTACTACAATCTAGCTATTTTCCCATAAATTAAcccaataaattaattaatgttgcTTTTACAGGTTCTCAAATCTCAAAACTAGTCAAAATACATGACCTCATTACCTCTCAATTCTACCTTTTCAACATTTTGCACTAACAAACGTTTGCCTACTAGAAAAATAACCCTCCTGGCCCGTATCTTATCTACCTAGGCTTGGTCTTTAGGGCTGCagtttaattttactcaatCTGTTCGTACTTTTATGTACTTAGTGTCCTCACAGTCCTTTCTCTCTTCTGCTGGACAACAATTCTGCCAGAAAACCTGCGTTTCACCCTCTTCGATGGTGAAGCTTACATCTGTAATCCAGTCTTATTATACCAAACTGTTGGTGCActacagaaacacaaacatatGTATTTGAAACTACATGACATCATAATGATGCTTTTATAACTGGTCCCACTAAACACAGTTATCCTAAATACTATTATCCATCTGTCAGTCGTTCAACTGTGTCTACAGTCCATGAGTCCATGAGTCCATGTGTCCCCTCCAATCCTGAAGAAGCTAACCAAAAGCGTCAACCCCTAACAGTCAGAAATAACAGCACTACAGTCCTGAGCAGTGTTacacttcaaaataaaaaagagaaataccTGGAAAAAGTAATAAAGAAATGGTGTAGCACTTGTGTAACAAaatcaaaaatgaacaaaagaaaaaatactttgccaacatataaaaaaacaagataaagagACAAGACTCCTGGAATGTTAGGAATAGTCCGTAGGTTTTCTGTCCATTCGCTCTTCGAGGTTCAGTGTCAAACCATCTGAATGGGGCTAGCACGTCACGTGACCTTTTATTAGACACACATTAGTCACCAATCTCACTAAAATCTCCATCAAATCTCCCTTAAATCTCTCTcaaatttctctctctttcttatcaTTCTCAAAAGACGTGATCATCTAAGATCTAAGATACGCAGCATCGGTCCCTGTGTCCTCTTTACAGAAAAAGCAGGCCGAAATGATTCCAGGCGAGTCTGTGCAATGGCTCTCTCTCCGATTCCGTTCGAGTCTGTGAGCTGGAGAAGGCTTATTTATGGGCTGGGGCAGCTGTAAGGCAGGGGCGATAAAGGACAGTCCATCGGAAATCCGCTCCGTGTCCCGGGTTCGTCCGTCCGACACGCCGAGCGTTCGCTCCTTTCCTTGCCAGACATCTTCAAAAGACTCAAACGCCAAACTGTGAACCCCAGCGGCCGAGCCGTGCTCAATGTAAACAGGGGCGAGTACGGGGTTGAATCGTGTTAAAAACGCGTGGTGCTCTGAGGGCCAGGAAGACGAGGAAAGGGGCGGCGTGAGGAACTCCGGGGTAGGACGGGTTTCTCCTCTGGGCCGAGCTGAGACGAGCCGCGCTATGTGACGTCCTCCTCTTCAGAGCAGTAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186677 True 3000 lncRNA 0.39 2 2386510 2480525

Neighbor

gene id symbol gene type direction distance location
LOC103042593 LOC108430758 coding upstream 23640 2322038 ~ 2362870 (+)
dpp6 LOC108430761,LOC108267703 coding upstream 156445 2102221 ~ 2230065 (+)
LOC103042278 NA coding upstream 471491 1869474 ~ 1915019 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding upstream 525995 1855297 ~ 1860515 (+)
LOC103043726 LOC103043726,LOC105899208 coding upstream 569298 1810725 ~ 1817212 (+)
LOC103042800 NA coding downstream 13439 2493964 ~ 2507127 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding downstream 41983 2522508 ~ 2530163 (+)
LOC111194265 NA coding downstream 81610 2562135 ~ 2564047 (+)
LOC103044323 LOC108430700 coding downstream 108992 2589517 ~ 2593691 (+)
LOC103044144 LOC108430743 coding downstream 208761 2689286 ~ 2711716 (+)
G137965 LOC108430757 non-coding upstream 15132 2350634 ~ 2371378 (+)
G137960 NA non-coding upstream 94046 2289092 ~ 2292464 (+)
G137951 arhgap21b,LOC108267702 non-coding upstream 140849 2244516 ~ 2245661 (+)
G137943 LOC108430760 non-coding upstream 148820 2207367 ~ 2237690 (+)
G137930 NA non-coding upstream 357702 2025193 ~ 2028808 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding downstream 8899 2489424 ~ 2491127 (+)
G138015 NA non-coding downstream 87514 2568039 ~ 2578880 (+)
G138026 NA non-coding downstream 127455 2607980 ~ 2609042 (+)
G138029 NA non-coding downstream 174451 2654976 ~ 2713458 (+)
G138043 NA non-coding downstream 175677 2656202 ~ 2733018 (+)
G137929 NA other upstream 362124 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 535197 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 886554 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1346540 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1397872 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 419950 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 601531 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 634895 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1321328 3801853 ~ 3839372 (+)
G138701 NA other downstream 1352730 3833255 ~ 3834460 (+)

Expression


Co-expression Network