G138043


Basic Information

Item Value
gene id G138043
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2656202 ~ 2733018 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186773
accacatccaacaggactaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctgtatccaaaaaacaacaaaagaaaacatgtaacaaaataaCATGTACATATGAATAAAGCATgattataataaaacatgattcaaacatgattaaaacaatatatttaaaagaggaaaaaattaACAGAATGAGTTAGAATAAAAGTgctgttacagaataaaagtgggaggagctgcagtgtttttaaacTGAGCTGCTCAAGTCCTGCTCAAAAAGgaaggttttcagtctggatttgaAAGTGTCTAGTGTTGGTTATACAAATTAGACCCGTGTATTAGGCCAGAATTTCACTTTAGTGTTTTATTGGCTGTTTAATTTCCAGAATGTCTTAAACGCAGGcaatatattaaagttttctCACTTTAAAGCTTTTGTATTAAGAATATTACAGCATTTAGCCATGTTAAAACGCTTAAAATACTgcttaaaacatgtaaaatgatCGTTCAACAAAGataacaacgtgctgtacaattacttaaataaaaaaagagatgaaCAATCTCACAacctttttatataataatgaaaaataaggcTTAAGATAATTTAATTATGCCAAGATAATGCttcatataattttatttttgaccaCAGGGTGTCAGTAGAATTCCTGTAAATAAAGCAGTATGAGGACACGGTATGTAAAGCAGTATGTTTTTCTATTCTTTACTGCTATATGAAAATAATCATGTCTTTAgatttgaggacagatctgatGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCATGCTGGATCAGTGATGACCCCTGAGCTGGATTCATGCTGGATCAGTGATGACTCCTGAGCTGGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCATGCTGGATCAGTGATGACCCCTGAGCTGGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCATGCTGGATCAGTGATGACCCCTGAGCAGGATTCC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU186773 True 1173 lncRNA 0.38 3 2656202 2733018

Neighbor

gene id symbol gene type direction distance location
LOC103044323 LOC108430700 coding upstream 62511 2589517 ~ 2593691 (+)
LOC111194265 NA coding upstream 92155 2562135 ~ 2564047 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding upstream 126039 2522508 ~ 2530163 (+)
LOC103042800 NA coding upstream 149075 2493964 ~ 2507127 (+)
tsen15 tsen15,LOC107681748 coding upstream 180022 2474061 ~ 2476180 (+)
LOC103044744 NA coding downstream 14800 2747818 ~ 2763344 (+)
LOC111194192 NA coding downstream 187701 2920719 ~ 2922118 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding downstream 210118 2943136 ~ 2978445 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding downstream 284562 3017580 ~ 3025513 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding downstream 305401 3038419 ~ 3049776 (+)
G138026 NA non-coding upstream 47160 2607980 ~ 2609042 (+)
G138015 NA non-coding upstream 77322 2568039 ~ 2578880 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding upstream 165075 2489424 ~ 2491127 (+)
G137982 ap2m1,LOC108430755 non-coding upstream 236171 2415925 ~ 2420031 (+)
G137978 NA non-coding upstream 247664 2407256 ~ 2408538 (+)
G138058 lrp8 non-coding downstream 32302 2765320 ~ 2768924 (+)
G138073 NA non-coding downstream 114539 2847557 ~ 2849112 (+)
G138074 NA non-coding downstream 129944 2862962 ~ 2863288 (+)
G138078 NA non-coding downstream 159625 2892643 ~ 2895410 (+)
G138080 NA non-coding downstream 164512 2897530 ~ 2899531 (+)
G137929 NA other upstream 631816 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 804889 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1156246 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1616232 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1667564 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 167457 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 349038 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 382402 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1068835 3801853 ~ 3839372 (+)
G138701 NA other downstream 1100237 3833255 ~ 3834460 (+)

Expression


Co-expression Network