G138078


Basic Information

Item Value
gene id G138078
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2892643 ~ 2895410 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186819
ACATAATGCGTGTGACGCCTGTGTCATGAGAATGTGGGCACTCTACATTTATTTCTCCATCCAGGACTGAGCTTAACActgtgagaaacagaaacagccCATGGGGGGGTACAGCTTTTccttacaaaattattttttacagcagtaaccagagaaaaaaaactatatatccAATTAGTTCATGTTGCAGAGtttagaaaaggagaaagaggggGGGAAAGGAAGAAAAGAACACAGCTTAGAATAAAACTGACATAAAAAGAAGGAGAAATCCAAGGGGAATCCTCGAATGGCACCGGAAAAGCCGACTAATGAAGGAGGAGCAGTTTCAAATCAAGTCCTCTCACCAGACGAGTGTCCGAGTCAACCACACGGCTGCATTAGCATGTGCAGAATCTGTGGAACGGTGGTGAGAAGCAGAGCGGTGGCCATGTGGACGCCATGGATGATCAAGTGTCTTAACAGAGAAGTCCACTTGCATAGAAACATAAGGggaaactaactaactaacaggAGTAATCCCTCACTTTCGGGACTTCATTTTCCGCCGGGTCTCCTTTTCCTGGTCTTTTATTTTTTCCTCCTTTGCCAAATTTCTTTCCCCCTTTCCCGTGGGCTGCTTTAGCCCGGAATCCTGAAACGTCATTATGGCTTCTTTCGTGTTCCTTTGGAGCCTTTCTTCCTGCCTCCAAAGCCAAACTTCTGGTCCTTGTACTTCCTCTTAGAGCTTGGGCCTCCTCTTTTGCCCATCTGTTCTTGGATGAGGCGGGTCCATTCTTTCCCTCCTTATCTCCTTCCAAGAAGTCCAACTTGTCTGTCATGCCTCTCTGATATTTCTTCACTGCCGTCATCATGTCCCTCTTCTGCTTCTGCCTCTTCTGGAGAACCTCCACTTGTACCTTTTTGCCGAACTTCCTCTGTTCTCTCAGCTTCTTGGCCTTTTCAGAATTCTCCATTGCTACTTGCTTCTGCATGAGCTTCTTCCTGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU186819 True 989 lncRNA 0.46 5 2892643 2895410

Neighbor

gene id symbol gene type direction distance location
LOC103044744 NA coding upstream 129299 2747818 ~ 2763344 (+)
LOC103044144 LOC108430743 coding upstream 180927 2689286 ~ 2711716 (+)
LOC103044323 LOC108430700 coding upstream 298952 2589517 ~ 2593691 (+)
LOC111194265 NA coding upstream 328596 2562135 ~ 2564047 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding upstream 362480 2522508 ~ 2530163 (+)
LOC111194192 NA coding downstream 25309 2920719 ~ 2922118 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding downstream 47726 2943136 ~ 2978445 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding downstream 122170 3017580 ~ 3025513 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding downstream 143009 3038419 ~ 3049776 (+)
LOC103024237 NA coding downstream 168517 3063927 ~ 3069951 (+)
G138074 NA non-coding upstream 29355 2862962 ~ 2863288 (+)
G138073 NA non-coding upstream 43531 2847557 ~ 2849112 (+)
G138058 lrp8 non-coding upstream 123719 2765320 ~ 2768924 (+)
G138030 NA non-coding upstream 143391 2680119 ~ 2749252 (+)
G138045 NA non-coding upstream 151876 2709396 ~ 2740767 (+)
G138080 NA non-coding downstream 2120 2897530 ~ 2899531 (+)
G138092 NA non-coding downstream 101144 2996554 ~ 2997077 (+)
G138123 NA non-coding downstream 214992 3110402 ~ 3114615 (+)
G138524 gipc2,LOC108430720 non-coding downstream 261346 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 361491 3256901 ~ 3296382 (+)
G137929 NA other upstream 868257 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1041330 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1392687 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1852673 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1904005 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 5065 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 186646 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 220010 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 906443 3801853 ~ 3839372 (+)
G138701 NA other downstream 937845 3833255 ~ 3834460 (+)

Expression


Co-expression Network