G138524 (gipc2,LOC108430720)


Basic Information

Item Value
gene id G138524
gene name gipc2,LOC108430720
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3156756 ~ 3175364 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187453
TTTAAGAACTACATTTTATTGATAATCAAGAGTGAGTGACTAGATTTATACATCTGCTCAGAAATATAGGAGACAACCAATACAGTGTGGGATAAAAACAGTCTCACTCTGCTTAGCTTATTAACTAAGTACCTGTATTGAAGCAAAGTGagatatattattaatcatACAAAACAAATTGAAACAAATGCCAATAGATCTGTGtagacatacatacatacatacaaacatacttAATTTTTGAACACGAAAGGTCCCTTATGGATTGTGCAGTACATCCAGTACACGTTAAACAACtacaattgtttaaaaaaaaaaaaaagcgcagtCTAATCAAGTTTCTCTCTTATCCAGCAGGTGGCACACGAGGTCTGAGCCCATCAAAAGATaagcctctcacacacattattaaaaagctTTCCTCAATATGCTTAAAAAGGCTCACTAGTAGAAAAACTGGCCAGATTTGAGCTAAAAGCAGAAAGTCTTCTTCAAAACTAGATTAGCAATTAAAGATGGCACTATGATGTTTACTATAAACGTATAAAGTCGCTTCCCATGCTGAAAtttcataaaacattataaaacattgcAGATATTGAAGGCAGTTCTAGtcaagtgttttttaaaagacTGTGTACAAGAGGaactttattaaacaaataaattaaaagactgaaaatatatctatctgtctataaaagtttaattattgtatatcgtacaccaaaaaaaaaaagaggacgagaaaaacAACGCTCTACAGGAATGTCCGATAAATCACCCTTATCTAAAACTGAGCGCTATACATTTTTAGCTGTAGATATTGTATAAAACAGATTACATGCAGGCAGTCCAGGCAGGCTTTAATGCCACATGATCTAAGAAAGAGTCCagaggctaaaaaaaaaaaatcctacaatCCTTCATAGAAACcaatttcctaaaaaaaaaaataataataataataattatacatacCTGCTTGGAAGCCAGTACAGTAAAAAGCTATTACTATACCAGCAAGGTAgaaaaacgtttaaaaaaaaaaaaaaatcatgtgacTGCTGCTCTGGTTACTGATAgactttacttacttacttactaattTATTAGtgttactgtacatttattcagtgtttccCCACTTTTATgcctgaattatttattataattatcatagaaaacaaacaaacaaacaaaaaactatcgtacaaaatgtaagtataatatTGTCTGATTGGTAGATTGATAAAACATGACGTGAccataaaacagtaaatcagCCTTAAAGGCACGTTTCATGCTTAGTAAGAAATGAGAGAAATACAAGTCATTCTTACATAAATCTGTTcatatcttttcttttttttttgtaaaaagtgaaaaatagagCAAATTTAAAATTTTGAGGGCTTTTCTGGAATCACTCTGCTTCTCTGCTCTACAGAAAAGtagactttttttgtttttcacagcTAGAAAAATAACAAGGGGTCAGTTAGTGCTACCCAGGAACATAAATAAGTACACTTGGAGTGAGCTGTAGTGTGATAgtgtaataatgtataatatgtaataataatgtgtaataatatgTGCCGTTAGATCACAGTGGTAAGAATCAGCAACACTCCCTTCCTAGCTTAACGACTGCGTGCCGTTAAGATAACAGGTTCCCAAAGACACAAGTAGTCGAGATTGACTGGGAAATAGAGGAGTGTGGGTAGCGATGgactgggattaaaagcgtccCTGCTTCGCGTCTCCGATGGCTCCCCACACGTCAAACACAAACTCATCAGGGAAGGCGAAGTCCCCGAGTGCTTCATCCAGAGCCATGGCAAATTCATCCGGGTTCACTTTGTCCCGACCAACCTCCACCATCGTTGCCGATAATTCCGTGTCACGGATGCCCATGTAACTCTCCAGCAGGTCATCTACTTTCTTCACGGCCTTCTCCTCAAACTCTGTGGGCATGTCCTCCACGGTCGCTGGGCCTTTAGAGCGTAATCTCAGGGTTCCTTTGCCGGTCCCAATTTTGTTCTCTCCTCCAGGTTTGCCTCCTTTCGACCGTGGCTCGAGCATATCGAAGGCCTTCATGGGCTCCACCAGTTTAAGGGTAAAGGGCTTGTCTTTGGGCAGGTCCTTCAGCATGCGGGCCACTTCATAATGCCGCGTCCCCACAATGTTCTGCCCATTAATGCACTCGATATGATCTCCCACACAGATCACCTTCACGCCATCCACCACACTGCCTTCCTTTattcgctgcacacacacacacacacacacacacacacacacacacacacactctcagaggAACAGGTGGGGCTACGAGAAGCTCATTAGAAACCCAAacaacctgcagcagcagaagcagatcCTCCTCACAGCCCTTCCCCAGCCCGGAGCCCCCGAGAAAACAGGAGTAAAGTGTAGAATTTGTCAGATAAGCTCTGcagatcctcctcctcctcctgctcctaaACTCTGGGCACGAAAACAATACTAAC
>TU187454
TTTAAGAACTACATTTTATTGATAATCAAGAGTGAGTGACTAGATTTATACATCTGCTCAGAAATATAGGAGACAACCAATACAGTGTGGGATAAAAACAGTCTCACTCTGCTTAGCTTATTAACTAAGTACCTGTATTGAAGCAAAGTGagatatattattaatcatACAAAACAAATTGAAACAAATGCCAATAGATCTGTGtagacatacatacatacatacaaacatacttAATTTTTGAACACGAAAGGTCCCTTATGGATTGTGCAGTACATCCAGTACACGTTAAACAACtacaattgtttaaaaaaaaaaaaaagcgcagtCTAATCAAGTTTCTCTCTTATCCAGCAGGTGGCACACGAGGTCTGAGCCCATCAAAAGATaagcctctcacacacattattaaaaagctTTCCTCAATATGCTTAAAAAGGCTCACTAGTAGAAAAACTGGCCAGATTTGAGCTAAAAGCAGAAAGTCTTCTTCAAAACTAGATTAGCAATTAAAGATGGCACTATGATGTTTACTATAAACGTATAAAGTCGCTTCCCATGCTGAAAtttcataaaacattataaaacattgcAGATATTGAAGGCAGTTCTAGtcaagtgttttttaaaagacTGTGTACAAGAGGaactttattaaacaaataaattaaaagactgaaaatatatctatctgtctataaaagtttaattattgtatatcgtacaccaaaaaaaaaaagaggacgagaaaaacAACGCTCTACAGGAATGTCCGATAAATCACCCTTATCTAAAACTGAGCGCTATACATTTTTAGCTGTAGATATTGTATAAAACAGATTACATGCAGGCAGTCCAGGCAGGCTTTAATGCCACATGATCTAAGAAAGAGTCCagaggctaaaaaaaaaaaatcctacaatCCTTCATAGAAACcaatttcctaaaaaaaaaaataataataataataattatacatacCTGCTTGGAAGCCAGTACAGTAAAAAGCTATTACTATACCAGCAAGGTAgaaaaacgtttaaaaaaaaaaaaaaatcatgtgacTGCTGCTCTGGTTACTGATAgactttacttacttacttactaattTATTAGtgttactgtacatttattcagtgtttccCCACTTTTATgcctgaattatttattataattatcatagaaaacaaacaaacaaacaaaaaactatcgtacaaaatgtaagtataatatTGTCTGATTGGTAGATTGATAAAACATGACGTGAccataaaacagtaaatcagCCTTAAAGGCACGTTTCATGCTTAGTAAGAAATGAGAGAAATACAAGTCATTCTTACATAAATCTGTTcatatcttttcttttttttttgtaaaaagtgaaaaatagagCAAATTTAAAATTTTGAGGGCTTTTCTGGAATCACTCTGCTTCTCTGCTCTACAGAAAAGtagactttttttgtttttcacagcTAGAAAAATAACAAGGGGTCAGTTAGTGCTACCCAGGAACATAAATAAGTACACTTGGAGTGAGCTGTAGTGTGATAgtgtaataatgtataatatgtaataataatgtgtaataatatgTGCCGTTAGATCACAGTGGTAAGAATCAGCAACACTCCCTTCCTAGCTTAACGACTGCGTGCCGTTAAGATAACAGGTTCCCAAAGACACAAGTAGTCGAGATTGACTGGGAAATAGAGGAGTGTGGGTAGCGATGgactgggattaaaagcgtccCTGCTTCGCGTCTCCGATGGCTCCCCACACGTCAAACACAAACTCATCAGGGAAGGCGAAGTCCCCGAGTGCTTCATCCAGAGCCATGGCAAATTCATCCGGGTTCACTTTGTCCCGACCAACCTCCACCATCGTTGCCGATAATTCCGTGTCACGGATGCCCATGTAACTCTCCAGCAGGTCATCTACTTTCTTCACGGCCTTCTCCTCAAACTCTGTGGGCATGTCCTCCACGGTCGCTGGGCCTTTAGAGCGTAATCTCAGGGTTCCTTTGCCGGTCCCAATTTTGTTCTCTCCTCCAGGTTTGCCTCCTTTCGACCGTGGCTCGAGCATATCGAAGGCCTTCATGGGCTCCACCAGTTTAAGGGTAAAGGGCTTGTCTTTGGGCAGGTCCTTCAGCATGCGGGCCACTTCATAATGCCGCGTCCCCACAATGTTCTGCCCATTAATGCACTCGATATGATCTCCCACACAGATCACCTTCACGCCATCCACCACACTGCCTTCCTTTattcgctgcacacacacacacacacacacacacacacacacacacactctcagaggAACAGGTGGGGCTACGAGAAGCTCATTAGAAACCCAAacaacctgcagcagcagaagcagatcCTCCTCACAGCCCTTCCCCAGCCCGGAGCCCCCGAGAAAACAGGAGTAAAGTGTAGAATTTGTCAGATAAGCTCTGcagatcctcctcctcctcctgctcctaaACTCTGGGCACGAAAACAATACTAAC

Function

symbol description
gipc2 Acts upstream of or within sprouting angiogenesis. Is expressed in several structures, including cardiovascular system; ectoderm; nervous system; segmental plate; and swim bladder bud. Orthologous to human GIPC2 (GIPC PDZ domain containing family member 2).

NR:

description
PREDICTED: PDZ domain-containing protein GIPC1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187453 True 2519 lncRNA 0.39 5 3156756 3175364
TU187454 False 2515 lncRNA 0.39 5 3156756 3175364

Neighbor

gene id symbol gene type direction distance location
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding upstream 702 3150876 ~ 3156054 (+)
LOC107197652 NA coding upstream 6976 3147247 ~ 3149780 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding upstream 13809 3127745 ~ 3142947 (+)
LOC103045957 LOC103045957,LOC108430690 coding upstream 48252 3105446 ~ 3108504 (+)
LOC103024237 NA coding upstream 86805 3063927 ~ 3069951 (+)
LOC103046575 LOC108430689 coding downstream 12368 3187732 ~ 3193555 (+)
cope cope,LOC107690966 coding downstream 19184 3194548 ~ 3200085 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding downstream 35196 3210560 ~ 3289693 (+)
st6galnac5 st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846 coding downstream 135797 3311161 ~ 3361634 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding downstream 242062 3417426 ~ 3477561 (+)
G138123 NA non-coding upstream 42141 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 159679 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 257225 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 261346 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 293468 2862962 ~ 2863288 (+)
G138534 NA non-coding downstream 81537 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 317332 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 329212 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 349267 3524631 ~ 3526308 (+)
G138642 NA non-coding downstream 408654 3584018 ~ 3584290 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 37268 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 71891 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 220627 2900475 ~ 2936129 (+)
G137929 NA other upstream 1132370 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1305443 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 626489 3801853 ~ 3839372 (+)
G138701 NA other downstream 657891 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 920633 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 990579 4165943 ~ 4172010 (+)
G138839 NA other downstream 1062245 4237609 ~ 4245864 (+)

Expression


Co-expression Network