G138609


Basic Information

Item Value
gene id G138609
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3524631 ~ 3526308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187578
ccttaaatgagctgctgatgTCTCTTCACAGTGTGTACGCACAGGTCAGTATGGTAGATATTTGGTAGCAAGGAGGTAACAAGGACATCATTTTGGTATCTTTGATGATCTTTCATGAGTAACAGTGATTTCCTATGGAGTTACATTGTGTTATATAGAACCAGAGTGTATTCTGTAGACTTAATGGAAAAAGGAAGGTTCCTCACCTCTGGTCCTCAAGTCATCCTCCTCCTCAGTCTCCATATCCAGGTCCTCGCAGGCTCCAGCTGGGGGAACCCTCAGAGATGTTGGGCTGCCTGGAGCTGCAGGTTCCTGAAAAACATggttttatgttatgttttcaGTCaataagcAGTATACTGACTTGCATTATCCTTACCTTATATCTTCACCTTGCTGGTGTACAGCTAGAGACTATAATTTCTGGATCTTTATCAATGGTCTTGCCCTTAATCAATGGCCATTTTCTCACCCCAGGGTTGCTCTGTAGTTCATGAGGAATGGGGTACAGGGTAGGCAGCAACACATACTGTTATAGAGCTACATAAAGAGGTGGAGGATTACCTGGCTGGGGGTCTGCAGAGGGGAGATGGGTTTGACAGCACTGGGCAGCAGGTTGGGAGGCCCAAGCTTCCTGTCCAGGAAGACCTCTTTGGCGCAGGCATAGCACCACACCCTCAGCGTAGTCAGATTTACAGTCAGGTTGTGCCGCGTCTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187578 True 720 lncRNA 0.47 2 3524631 3526308

Neighbor

gene id symbol gene type direction distance location
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 47070 3417426 ~ 3477561 (+)
st6galnac5 st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846 coding upstream 162997 3311161 ~ 3361634 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding upstream 234938 3210560 ~ 3289693 (+)
cope cope,LOC107690966 coding upstream 324546 3194548 ~ 3200085 (+)
LOC103046575 LOC108430689 coding upstream 331076 3187732 ~ 3193555 (+)
miga1 miga1,LOC107558173 coding downstream 10109 3536417 ~ 3552555 (+)
fubp1 fubp1 coding downstream 28621 3554929 ~ 3568678 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding downstream 44835 3571143 ~ 3581126 (+)
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding downstream 58841 3585149 ~ 3598602 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding downstream 374846 3901154 ~ 3942480 (+)
G138593 NA non-coding upstream 17686 3504576 ~ 3506945 (+)
G138598 NA non-coding upstream 30268 3492696 ~ 3494363 (+)
G138534 NA non-coding upstream 228249 3256901 ~ 3296382 (+)
G138524 gipc2,LOC108430720 non-coding upstream 349267 3156756 ~ 3175364 (+)
G138123 NA non-coding upstream 410016 3110402 ~ 3114615 (+)
G138642 NA non-coding downstream 57710 3584018 ~ 3584290 (+)
G138647 NA non-coding downstream 75547 3601855 ~ 3602193 (+)
G138658 NA non-coding downstream 84885 3611193 ~ 3611402 (+)
G138661 NA non-coding downstream 137468 3663776 ~ 3664008 (+)
G138663 NA non-coding downstream 143054 3669362 ~ 3669576 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 405143 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 439766 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 588502 2900475 ~ 2936129 (+)
G137929 NA other upstream 1500245 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1673318 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 275545 3801853 ~ 3839372 (+)
G138701 NA other downstream 306947 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 569689 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 639635 4165943 ~ 4172010 (+)
G138839 NA other downstream 711301 4237609 ~ 4245864 (+)

Expression


Co-expression Network