G138647


Basic Information

Item Value
gene id G138647
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3601855 ~ 3602193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187628
ATGGAAGACTCATCTGCTGATGGAGTTGCTGAGAGAGGCAGGCGGCATCTAATGAAAGGCCTGATTGATGCAGCGCTCTGATGTTCCTATGACGAACTCCACACAGCGACACAGCTCACTTAACCTGACTCACACCAACAATATCGCTTCTGCGCACCATTAACACATGAACTACGCAATCAACTGCACAgggccccaagcaaaatggacCCCAACACATTTCATTGGACTGTCTCTGTCTTGTCTGAGcaagcaaagcaatggtataaaaccaccatctttactgaaactgtatattgtaatatacaaaCATAACCAtgtaaaactcagttcagttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187628 True 339 lncRNA 0.44 1 3601855 3602193

Neighbor

gene id symbol gene type direction distance location
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 3253 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 20729 3571143 ~ 3581126 (+)
fubp1 fubp1 coding upstream 33177 3554929 ~ 3568678 (+)
miga1 miga1,LOC107558173 coding upstream 49300 3536417 ~ 3552555 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 124294 3417426 ~ 3477561 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding downstream 298961 3901154 ~ 3942480 (+)
LOC103021527 NA coding downstream 393749 3995942 ~ 4002916 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding downstream 420243 4022436 ~ 4046639 (+)
LOC103033521 b3gnt5 coding downstream 450537 4052730 ~ 4065474 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 473295 4075488 ~ 4080104 (+)
G138642 NA non-coding upstream 17565 3584018 ~ 3584290 (+)
G138609 NA non-coding upstream 75547 3524631 ~ 3526308 (+)
G138593 NA non-coding upstream 94910 3504576 ~ 3506945 (+)
G138598 NA non-coding upstream 107492 3492696 ~ 3494363 (+)
G138534 NA non-coding upstream 305473 3256901 ~ 3296382 (+)
G138658 NA non-coding downstream 9000 3611193 ~ 3611402 (+)
G138661 NA non-coding downstream 61583 3663776 ~ 3664008 (+)
G138663 NA non-coding downstream 67169 3669362 ~ 3669576 (+)
G138665 NA non-coding downstream 79533 3681726 ~ 3681930 (+)
G138671 NA non-coding downstream 118745 3720938 ~ 3753410 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 482367 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 516990 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 665726 2900475 ~ 2936129 (+)
G137929 NA other upstream 1577469 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1750542 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 199660 3801853 ~ 3839372 (+)
G138701 NA other downstream 231062 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 493804 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 563750 4165943 ~ 4172010 (+)
G138839 NA other downstream 635416 4237609 ~ 4245864 (+)

Expression


Co-expression Network