LOC103047488 (pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752)


Basic Information

Item Value
gene id LOC103047488
gene name pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3801853 ~ 3839372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187669
GTTTGACGGTCAAAACATATTGTTGGAGAGGGACTTGTTGTTAGAGGGGGTGGGGGTTTGGGTGAATGGCGCACTTCATCTGCTTCCTGCTCCAGCAAGGGCTCGACTCAACGTGATAACTGATCCTCCCTTCAGAGCTATCAATAATGCAGGTGGAGATCCAAAGCCCCGTGGTCTCTTAAAGAAGCCAGCGAGCCCTGGATTGGGTATCAGGGCTTCGTCTGGGGAGGCCCATTGAAGCAGTCTGCTCGACTCCTTTAGGGTTCTTTTGAGAGggaactttttcttttttcttagcTTTAGAAGAAAAGCTAAGAAGCTAACTCTAGCAGAGCTCCTCCATTATGCAATTCCCGAGGCGGTTGTGAGACATGGCGACTGTTGCCTAGATTCCATGTCATACAGGAGGCCGAGAGACCGGAGAGCGTTATATTCTATGGTGAGAGAGGCTCGGCGGAGTGTGGCATGGAGAACAACGTCACGCAAATCTCTCGAGAGGACCTACAGGACCTGCGTGAGGCCTTCAACAAAATCGACATTGATAACAGCGGCTTCGTCAGCGACTTCGAGCTGCAGGAGCTCTTTCGGGAAGCCAGCTTCTCTCTGCCAGGGTACAAGGTGCGGGAGATAGCGGAGAAGTTCGTCGCCGGGGACACCAACAAAGACGAGAAGATCAGCTTCGAGGAGTTTGTTGCGATATACCAGGAGCTGAGGAGCAAAGAAGTGAGGGAGACCTTCCGCAAGACCATTTCCAGACGAGATGGAATCCACTCGTTCGGAGGAACATCTGGAATCTCGAGCGAGGGAACGCAGCACTCGTACGCCGATGAAGAGAAAGTGGCCTTTGTAAACTGGATCAATAAGGCCTTGGCAAACGACCCCGACTGCAAACATCTCATCCCTATGGACCCCACCACCGACAGCCTGTTCAAATCCGTCAAGGATGGAATACTTCTATGCAAAATGATCAACCTCTCCCAGCCAGACACGATCGATGAACGAGTCATCAATACAAAGAAGCGCACAACGTTCACCATGACTGAGAACCTGATCCTGGCCCTGAATTCAGCCTCAGCCATTGGTTGTACAGTGGTGAACATCGACTCCCAGGACATGATAGCTGGGACCCCCCACTTGGTGCTGGGGCTCCTCTGGCAGATCATTAAGATCGGCCTCTTTGCAGACATCGAGATTTCTCGCAATGAAGGTCAGAAACTCACCACAATCCAGCACATTTCTCAATCCTGTCCTTGGGGTTCCATCGCC
>XM_022677693.1
aaggtttcttcctccttccTGTGCTTCCATTTACTTCACACCTTACGTCCGTACAGTCGCACCCTGTGTAGCCTACTGGAGTTTCCCCCGTAACCTGGAGCCCGGCTTTAGCAGGGTGGAGCGGGAGTCAAGCTTATATTCTATGGTGAGAGAGGCTCGGCGGAGTGTGGCATGGAGAACAACGTCACGCAAATCTCTCGAGAGGACCTACAGGACCTGCGTGAGGCCTTCAACAAAATCGACATTGATAACAGCGGCTTCGTCAGCGACTTCGAGCTGCAGGAGCTCTTTCGGGAAGCCAGCTTCTCTCTGCCAGGGTACAAGGTGCGGGAGATAGCGGAGAAGTTCGTCGCCGGGGACACCAACAAAGACGAGAAGATCAGCTTCGAGGAGTTTGTTGCGATATACCAGGAGCTGAGGAGCAAAGAAGTGAGGGAGACCTTCCGCAAGACCATTTCCAGACGAGATGGAATCCACTCGTTCGGAGGAACATCTGGAATCTCGAGCGAGGGAACGCAGCACTCGTACGCCGATGAAGAGAAAGTGGCCTTTGTAAACTGGATCAATAAGGCCTTGGCAAACGACCCCGACTGCAAACATCTCATCCCTATGGACCCCACCACCGACAGCCTGTTCAAATCCGTCAAGGATGGAATACTTCTATGCAAAATGATCAACCTCTCCCAGCCAGACACGATCGATGAACGAGTCATCAATACAAAGAAGCGCACAACGTTCACCATGACTGAGAACCTGATCCTGGCCCTGAATTCAGCCTCAGCCATTGGTTGTACAGTGGTGAACATCGACTCCCAGGACATGATAGCTGGGACCCCCCACTTGGTGCTGGGGCTCCTCTGGCAGATCATTAAGATCGGCCTCTTTGCAGACATCGAGATTTCTCGCAATGAAGGTCAGAAACTCACCACAATCCAGCACATTTCTCAATCCTGTCCTTGGGGTTCCATCGCCCTGAACAATCTGTACCAGCATGATCttcaatgtttgtttttttcacaggACTCCAGGGCCTACTTCCACCTGCTGGATCAGATCTCCCCGAAAGGAGACGGAGACGACGAGATGCGGATCTCTATCGACATGTCCGGCCTGAACGAGCGTGATGACGAGAGGAGGGCGGAGCTAATGCTGAGACAGGCAGCTCGTCTGGACTGCAGGCAGTTCGTCACCCCTCAGGACGTGGTGGCGGGAAACCACAAGCTCAACATGGCTTTTGTAGCCAACTTGTTCAACATGTTTCCCGCTCTGAGCAGACCAGCCAACAACGGCATCGACCTCGCCATGCTGGAGGGGGAATCGCGAGAAGACCGGACCTTCAGGAACTGGATGAATTCGCTGGGGGTTAATCCATACGTCAATCACCTGTACAGtgaccTGATGGACGGTCTGATCATTCTTCAGCTGTACGAGCGAATCCAGGTTCCTGTGGACTGGAGGAAAGTCAACCGTCCTCCATATTCCATTCTGGGCTCCAACATGAAAAAACTTGAGAACTGTAATTATGCTGTAGAGCTGGGCAAAAGGGAAGCAAAGTTTTCTCTGGTGGGGATCGGAGGTGAAAATATCAACGAGGGCAGCGCCATGCACACCCTGGCACTGGTTTGGCAGCTAATGAGAAGGTACACAGTCAAAGTTCTGGCGGACATCGGCCACGGAGAGAAAGTAAACGACCAGATCATCGTCGACTGGGTGAACAGCACTTTACAGAAAGGACAAAAAGACTCGTCTATCAAAAACTTTAAGGACAAATCGATCAGCACCAGCCTGCCGGTGATCGATCTGATCGATACCATAGCCCCCGGCGCCATCAAGAGCGAGATGGTGAAGAGAGGAGACATGAGCCCTGAGGATAAACTCAACAACGCAAAgtATGCCATCTCTGTGTCTCGTAAAATCGGAGCCAAGGTGTACGCCCTGCCCGACGACCTCGTAGAGGTTAACCCAAAGATGGTGATGACTGTATTCGCATGTTTGATGGGGAGGAGTCTGAACAAAGTGCAGGGCTAACCTTTGTGTCCTTTTTTCATCTGTTTCCTCTCATTACCTTTCTGTCATTCGTCCGTGCCCCATCTATTTCCATAACTGCCATTCGCTCCTTCTTTCTGAGTCCTGGTTTATGGAATTTCTCACCCAGAAATGCTAAGAATAAAATATTACGAAATGCTAACAGACCCTCTCTTATTCATTATTAGCACCATTAGCATTTTTGGGTGAGGTTTTTTTCATGGACCTTAAAATCTACCATTTCTAAATGCCCCACCATTTCTGTAATATCTTTATATCTtacctttttatctttttatgaaACATAGTGATTGCTGAAACATGAAAATGTCcactaaacatttaatttttgctGGCAACATAATATGCATCCAGGTGTTGAACACGTGTTCATGTTTGTAAATGTTTGCTTTCCAATgagtcaaaaaaataaatctgtcaaATAAA

Function

symbol description
pls1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and actin filament network formation. Predicted to be active in actin filament; actin filament bundle; and cytoplasm. Is expressed in macrophage; otic vesicle; pronephros; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 76. Orthologous to human PLS1 (plastin 1).

NR:

description
PREDICTED: plastin-1-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187669 False 1266 TUCP 0.52 7 3801853 3815437
XM_022677693.1 True 2472 mRNA 0.49 15 3804787 3839372

Neighbor

gene id symbol gene type direction distance location
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 203251 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 220727 3571143 ~ 3581126 (+)
fubp1 fubp1 coding upstream 233175 3554929 ~ 3568678 (+)
miga1 miga1,LOC107558173 coding upstream 249298 3536417 ~ 3552555 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 324292 3417426 ~ 3477561 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding downstream 61782 3901154 ~ 3942480 (+)
LOC103021527 NA coding downstream 156570 3995942 ~ 4002916 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding downstream 183064 4022436 ~ 4046639 (+)
LOC103033521 b3gnt5 coding downstream 213358 4052730 ~ 4065474 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 236116 4075488 ~ 4080104 (+)
G138671 NA non-coding upstream 48443 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 68393 3732030 ~ 3733460 (+)
G138665 NA non-coding upstream 119923 3681726 ~ 3681930 (+)
G138663 NA non-coding upstream 132277 3669362 ~ 3669576 (+)
G138661 NA non-coding upstream 137845 3663776 ~ 3664008 (+)
G138731 NA non-coding downstream 42179 3881551 ~ 3907123 (+)
G138744 NA non-coding downstream 196999 4036371 ~ 4039858 (+)
G138747 NA non-coding downstream 229415 4068787 ~ 4072088 (+)
G138758 NA non-coding downstream 265608 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 333399 4172771 ~ 4175585 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 682365 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 716988 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 865724 2900475 ~ 2936129 (+)
G137929 NA other upstream 1777467 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1950540 1835477 ~ 1851313 (+)
LOC111194271 NA other downstream 256625 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 326571 4165943 ~ 4172010 (+)
G138839 NA other downstream 398237 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 834008 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 863974 4703346 ~ 4708663 (+)

Expression


Co-expression Network