LOC111194271


Basic Information

Item Value
gene id LOC111194271
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4095997 ~ 4102241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187791
ACTGGAAGTGCTGGTTGCTAAAACTGTTGAACAGGTTAAGGGAGCATCTCAGGTTAACGCTCCACACTGAGAGCAGACAGAAGAACATGCTCCTCTTCATGCTCCTCGCGGGATCCCTGGCTTTTACTGCAGGGCAGTATGGAGCCTATGAAACTTCTCCAACTGTATCAGAAGAACCAGTCTTCACAAACCCTGAGACTTCCGCCACCACTCAGAAGACCACAACACAGCAGTACAatTATCCagtggtaacaggactgaggcTGAAGGTGAAGTGTTTTAAAGAACTGAACGCCACCGTGGCTAAGCAGCTTCTGAAGCAGTATCTACCTGAAATTTCTTCTGATCTCTTCCGTCTCACTGTAAAGAACATTACCAAGTTATGAagacctgcagcagcagcagaatatTCACATTTCTGAAACCTTGATCCTCTACTGCATCTTTAAGCTAATGTTTGgcagtgtttaatgttaaaCTATAACTATATTATCAAGGGAAATCATATTggaatactttattatttttagggcactaatacaaataattagagtgattattaagctttttttctattattattaccttttttttaagacCCCAAGTTTTGAAATATATACCTCTATTAAATACCTCTATAAAAAGAGATTTGTAGAGACGATATAATCAGGTTTAATTCTTTTCTACACTTTCtttaataaaactgtgattcaaaatttaaaataaaaaaaataaagcgtCAGTCAATAtgattttgtttctaaactgtaagcagaagcatttctgagtggagaagaatatggataaaatattgtgtttaatggtaccagtgttgtggaacgaccatccctgctaggCCTAAAATATTCATTCTTAAAATACTGGGGTGTCGAGTCgcttttcgcgggagttcttctctttttctggccacgtcacacgtctttacatacttcggctcagttttactgaacgcaaacggctggtggagcaacagggacttcagaagaggaaactcagagctcagtagctcctccattcactcatagtaaaaccaaagaaatgaaagagttaagtttctgactgatctctctctctctctctatctctatctctctgtctttgactgaacataacctggaatcggattcatcatctctaaaaggagaccgcatcacaccgcccagtttaaaatgattcttctgcatgctcggtgcaattacccattctcaccagagagggctccAAATCTCCTAAATCCCAAaatttacagacatcagctttaaattaaagttgTGTATTGAATTTATATATTCTTGTTTTGCTCAACTgcatgataatataatatatagaggaatataaatataaaaatacactggACTATCTTGTATTTGGGGCCACTATATACACTCTACAGCCTTAGAATATGTGCTTACCTTCAAAAATGAcaccaaaaaactaaaacaaaaaatgtgtgttgaatgatttacacatacagtaagaattgaaaataaaaaaaaaaatacagttgaaAAAACATATTGTGACATCTAGTGGGTTTTATCATAACACACCTAGAAGAGTTAAGGGTTaagttatatattttgtgtggtgttaaatgtatttaatgttacaatttactgagga
>XR_002651006.1
TGAGATGAGTGGCAGCTTTACTGGAAGTGCTGGTTGCTAAAACTGTTGAACAGGTTAAGGGAGCATCTCAGGTTAACGCTCCACACTGAGAGCAGACAGAAGAACATGCTCCTCTTCATGCTCCTCGCGGGATCCCTGGCTTTTACTGCAGGGCAGTATGGAGCCTATGAAACTTCTCCAACTGTATCAGAAGAACCAGTCTTCACAAACCCTGAGACTTCCGCCACCACTCAGAAGACCACAACACAGCAGTACAatTATCCagtggtaacaggactgaggcTGAAGGTGAAGTGTTTTAAAGAACTGAACGCCACCGTGGCTAAGCAGCTTCTGAAGCAGTATCTACCTGAAATTTCTTCTGATCTCTTCCGTCTCACTGTAAAGAACATTACCAAGTTATGAagacctgcagcagcagcagaatatTCACATTTCTGAAACCTTGATCCTCTACTGCATCTTTAAGCTAATGTTTGgcagtgtttaatgttaaaCTATAACTATATTATCAAGGGAAATCATATTggaatactttattatttttagggcactaatacaaataattagagtgattattaagctttttttctattattattaccttttttttaagacCCCAAGTTTTGAAATATATACCTCTATTAAATACCTCTATAAAAAGAGATTTGTAGAGACGATATAATCAGGTTTAATTCTTTTCTACACTTTCtttaataaaactgtgattcaaaatttaaaataaaaaaaataaagcgtCAGTCAATAtgattttgtttctaaactgtaagcagaagcatttctgagtggagaagaatatggataaaatattgtgtttaatggtaccagtgttgtggaacgaccatccctgctaggCCTAAAATATTCATTCTTAAAATACTGGGGTGTCGAGTCgcttttcgcgggagttcttctctttttctggccacgtcacacgtctttacatacttcggctcagttttactgaacgcaaacggctggtggagcaacagggacttcagaagaggaaactcagagctcagtagctcctccattcactcatagtaaaaccaaagaaatgaaagagttaagtttctgactgatctctctctctctctctatctctatctctctgtctttgactgaacataacctggaatcggattcatcatctctaaaaggagaccgcatcacaccgcccagtttaaaatgattcttctgcatgctcggtgcaattacccattctcaccagagagggctccAAATCTCCTAAATCCCAAaatttacagacatcagctttaaattaaagttgTGTATTGAATTTATATATTCTTGTTTTGCTCAACTgcatgataatataatatatagaggaatataaatataaaaatacactggACTATCTTGTATTTGGGGCCACTATATACACTCTACAGCCTTAGAATATGTGCTTACCTTCAAAAATGAcaccaaaaaactaaaacaaaaaatgtgtgttgaatgatttacacatacagtaagaattgaaaataaaaaaaaaaatacagttgaaAAAACATATTGTGACATCTAGTGGGTTTTATCATAACACACCTAGAAGAGTTAAGGGTTaagttatatattttgtgtggtgttaaatgtatttaatgttacaatttactgaggaaatattattaaatagaaaaataaactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187791 False 1644 TUCP 0.36 4 4096016 4102214
XR_002651006.1 True 1690 lncRNA 0.36 4 4095997 4102241

Neighbor

gene id symbol gene type direction distance location
ccdc39 NA coding upstream 555 4081012 ~ 4095442 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 15893 4075488 ~ 4080104 (+)
LOC103033521 b3gnt5 coding upstream 30523 4052730 ~ 4065474 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 49358 4022436 ~ 4046639 (+)
LOC103021527 NA coding upstream 93081 3995942 ~ 4002916 (+)
LOC103022774 NA coding downstream 39855 4142096 ~ 4154519 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 205407 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 236842 4339083 ~ 4344329 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 283377 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 542760 4645001 ~ 4658142 (+)
G138747 NA non-coding upstream 23909 4068787 ~ 4072088 (+)
G138744 NA non-coding upstream 56139 4036371 ~ 4039858 (+)
G138731 NA non-coding upstream 188874 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 342587 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 362537 3732030 ~ 3733460 (+)
G138758 NA non-coding downstream 2739 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 70530 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 134428 4236669 ~ 4237527 (+)
G138863 NA non-coding downstream 249140 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 252601 4354842 ~ 4355190 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 256625 3801853 ~ 3839372 (+)
G138701 NA other upstream 261537 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 976509 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 1011132 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 1159868 2900475 ~ 2936129 (+)
LOC103023077 NA other downstream 63702 4165943 ~ 4172010 (+)
G138839 NA other downstream 135368 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 571139 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 601105 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 787632 4889873 ~ 5007006 (+)

Expression


Co-expression Network