G138839


Basic Information

Item Value
gene id G138839
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4237609 ~ 4245864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187927
aaaaaatatcataaaattaCCGTCTCTTTCAAGGGGTTCATAGAACGATCCACAAATGTGAACATCTTGAGGACAAAGCGCTTGTAATGGCTGGGGTACTGAAGTCCAGATGACCCATCAACTGGAACCAGGGTGGTCAGGTAGCGATCATCCTTGTTCGGGCACCTTTCAAAAGGAATCAGGTCAATGCTCGCAAGTACTAAAGCAAGGGACCTTAGTGATAGACATGCAGCCAACTTACCCATTCACCAGAAGATCCCACTGAGGTACACTGTCCCGGTCAGGTGTAGAGGTTGCCCAACAGTGTCCCAAGACCAGGACCAGATTGGGATCAGTTCGCCCCAACATGCGCACCTCAACGTATACAGGCTCCCTCAGGACCTTGGTCACAGGGTAGTCATTTTCAGCATAGTAGGAAGTATACGCTACTTGCTCTGTGGAGAACTTCCACACAGCCCTTTGTCACACACTGACCATTGCCAAGCCTCAGCTCTACCCTGAGCGGGCCAGAAGCCATTAAAGGTAGAGGAGGATCATTGGAAGAAAGTGCAACAGCCAGGGACTCGACACTTGTAGCAGAATATCTACACTGGAAGTAAAGCCTGGCAAAAGGATTTAAGAGATTAATAAAAGCTCACAACTTGCAAAACAAATCTTCAGAATCCATGAATCTAACTCACTCGTAGTGGCTGTCTCTTGTGATGGAACCAAGGGGTCCCACACCAACTTCATAGGAAGACACCATTTTGTTCTCATAGACCACATAGTCACTAAACACCTGTTGCGTTTGTTCCACAAGCAGTTACAGGAAACTGGTATATAGCAAAGTCAGCATTATAGTCCACAACAGCACAGGGCCCATCACTTCCTCCCAACAGGCTGATGGAATCCAAGCTGATCCTAGGAAGTGTTGTATTCCGGGCCACCACCAAAACAAACTGCCCATCGACTGTACACTGGACAGTCACTGTTTACCATAGTAGCACTGCTGCCCATCAAAGCAGCAGTTTATAGCACCACAGTGGGAAGCATCCAAGCCTGGTTCACCACAGGGAATCTTGTCAGAATCATCCAGATTACATTTATCAGCAGTAGTTACCTGTACCTGAGGATCAGACCCTGGTGGTAACAGCCCAgaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggccCGGAAGGTTGGGGAGCCAGAGGCCCAGAAGGTTGAGAGGGAAGTTGCCAAGATGGCTGAAAAAGAAGTGGCCCAGAAAGCTGGGGAACCAGAGACCCAGATGGCAGCCCAGAAAACTGTGGGGTTTGAGGTTGTTCCTCTGATAGAGCTCGAGGACTCCAACGAGCTACAGCTGCATTGCTCACAGAATTCAACCAAAGAACCACAAATACAATAGAACCCCACATTTTTCTCTGTGCTTCCagcaaaaaacataatggtccaTGTTTCTGCTGACCTT
>TU187928
aaaaaatatcataaaattaCCGTCTCTTTCAAGGGGTTCATAGAACGATCCACAAATGTGAACATCTTGAGGACAAAGCGCTTGTAATGGCTGGGGTACTGAAGTCCAGATGACCCATCAACTGGAACCAGGGTGGTCAGGTAGCGATCATCCTTGTTCGGGCACCTTTCAAAAGGAATCAGGTCAATGCTCGCAAGTACTAAAGCAAGGGACCTTAGTGATAGACATGCAGCCAACTTACCCATTCACCAGAAGATCCCACTGAGGTACACTGTCCCGGTCAGGTGTAGAGGTTGCCCAACAGTGTCCCAAGACCAGGACCAGATTGGGATCAGTTCGCCCCAACATGCGCACCTCAACGTATACAGGCTCCCTCAGGACCTTGGTCACAGGGTAGTCATTTTCAGCATAGTAGGAAGTATACGCTACTTGCTCTGTGGAGAACTTCCACACAGCCCTTTGTCACACACTGACCATTGCCAAGCCTCAGCTCTACCCTGAGCGGGCCAGAAGCCATTAAAGGTAGAGGAGGATCATTGGAAGAAAGTGCAACAGCCAGGGACTCGACACTTGTAGCAGAATATCTACACTGGAAGTAAAGCCTGGCAAAAGGATTTAAGAGATTAATAAAAGCTCACAACTTGCAAAACAAATCTTCAGAATCCATGAATCTAACTCACTCGTAGTGGCTGTCTCTTGTGATGGAACCAAGGGGTCCCACACCAACTTCATAGGAAGACACCATTTTGTTCTCATAGACCACATAGTCACTAAACACCTGTTGCGTTTGTTCCACAAGCAGTTACAGGAAACTGGTATATAGCAAAGTCAGCATTATAGTCCACAACAGCACAGGGCCCATCACTTCCTCCCAACAGGCTGATGGAATCCAAGCTGATCCTAGGAAGTGTTGTATTCCGGGCCACCACCAAAACAAACTGCCCATCGACTGTACACTGGACAGTCACTGTTTACCATAGTAGCACTGCTGCCCATCAAAGCAGCAGTTTATAGCACCACAGTGGGAAGCATCCAAGCCTGGTTCACCACAGGGAATCTTGTCAGAATCATCCAGATTACATTTATCAGCAGTAGTTACCTGTACCTGAGGATCAGACCCTGGTGGTAACAGCCCAgaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaaagtggccCGGAAGGTTGGGGAGCCAGAGGCCCAGAAGGTTGAGAGGGAAGTTGCCAAGATGGCTGAAAAAGAAGTGGCCCAGAAAGCTGGGGAACCAGAGACCCAGATGGCAGCCCAGAAAACTGTGGGGTTTGAGGTTGTTCCTCTGATAGAGCTCGAGGACTCCAACGAGCTACAGCTGCATTGCTCACAGAATTCAACCAAAGAACCACAAATACAATAGAACCCCACATTTTTCTCTGTGCTTCCagcaaaaaacataatggtccaTGTTTCTGCTGACCTT
>TU187937
ACCTCAATAAGCTAGCAATAAAAGGTAGTCCATGACCCACATTACCATTCTGACTGCAATGGGTTAAGAGAAAGACACACAATTCAAAAGCAAGACCCCTTTATTGAGAACAGAGTCACAATCAATCCTGCTGGAGCTGGGCAGTTTGTGTGTAAATCACTTCTCCACTAGACACAACTGATTCAGGCTCCGATTTCCAGGCAACCGATCCAACATCTCTCCCCTTCTATCGCACTTTTGTTCACAAGCGGCACCTGCAGTTGGAGAGCACACAGCTGTGCTGCAGTGGATGTAGAtGTCTCTTTCAAGGGGTTCATAGAACGATCCACAAATGTGAACATCTTGAGGACAAAGCGCTTGTAATGGCTGGGGTACTGAAGTCCAGATGACCCATCAACTGGAACCAGGGTGGTCAGGTAGCGATCATCCTTGTTCGGGCACCATTCACCAGAAGATCCCACTGAGGTACACTGTCCCGGTCAGGTGTAGAGGTTGCCCAACAGTGTCCCAAGACCAGGACCAGATTGGGATCAGTTCGCCCCAACATGCGCACCTCAACGTATACAGGCTCCCTCAGGACCTTGGTCACAGGGTAGTCATTTTCAGCATAGTAGGAAGTATACGCTACTTGCTCTGTGGAGAACTTCCACACAGCCCTTTGTCACACACTGACCATTGCCAAGCCTCAGCTCTACCCTGAGCGGGCCAGAAGCCATTAAAGGTAGAGGAGGATCATTGGAAGAAAGTGCAACAGCCAGGGACTCGACACTTGTAGCAGAATATCTACACTGGAAGTAAAGCCTGGCAAAAGGATTTAAGAGATTAATAAAAGCTCACAACTTGCAAAACAAATCTTCAGAATCCATGAATCTAACTCACTCGTAGTGGCTGTCTCTTGTGATGGAACCAAGGGGTCCCACACCAACTTCATAGGAAGACACCATTTTGTTCTCATAGACCACATAGTCACTAAAACCATTGCGTTTGTTCCACAAGCAGTTACAGGAAACTGGTATATAGCAAAGTCAGCATTATAGTCCACAACAGCACAGGGCCCATCACTTCCTCCCAACAGGCTGATGGAATCCAAGCTGATCCTAGGAAGTGTTGTATTCCGGGCCACCACCAAAACAAACTGCCCATCGACTGTACACTGGACAGTCACTGTTACCATAGTAGCACTGCTGCCCATCAAAGCAGCAGTTTATAGCACCACAGTGGGAAGCATCCAAGCCTGGTTCACCACAGGGAATCTTGTCAGAATCATCCAGATTACATTTATCAGCAGTAGTTACCTGTACCTGAGGATCAGACCCTGGTGGTAACAGCCCAgaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggccCGGAAGGTTGGGGAGCCAGAGGCCCAGAAGGTTGAGAGGGAAGTTGCCAAGATGGCTGAAAAAGAAGTGGCCCAGAAAGCTGGGGAACCAGAGACCCAGATGGCAGCCCAGAAAACTGTGGGGTTTGAGGTTGTTCCTCTGATAGAGCTCGAGGACTCCAACGAGCTACAGCTGCATTGCTCACAGAATTCAACCAAAGAACCACAAATACAATAGAACCCCACATTTTTCTCTGTGCTTCCagcaaaaaacataatggtccaTGTTTCTGCTGACCTT
>TU187938
CCTTCCACACAGCCCTTTGAAACACACTGTCCATTGCCAAGTCTCAGCTCTACCCTGAGGGGACCAGAAGCCACTACAGGTAGAGGAGGATCATTGGAAGAAAGTGCAACAGCCAGGGACTCGACACTTGTAGCAGAATATCTACACTGGAAGTAAAGCCTGGCAAAAGGATTTAAGAGATTAATAAAAGCTCACAACTTGCAAAACAAATCTTCAGAATCCATGAATCTAACTCACTCGTAGTGGCTGTCTCTTGTGATGGAACCAAGGGGTCCCACACCAACTTCATAGGAAGACACCATTTTGTTCTCATAGACCACATAGTCACTAAACACCTGATAAGACAGACAAACATTGTAGACCTCTACAAACAAGCAGCAACTACCTGGAAACAAGTTTAGCACCAACCATTGCGTTTGTTCCACAAGCAGTTACAGGAAACTGGTATATAGCAAAGTCAGCATTATAGTCCACAACAGCACAGGGCCCATCACTTCCTCCCAACAGGCTGATGGAATCCAAGCTGATCCTAGGAAGTGTTGTATTCCGGGCCACCACCAAAACAAACTGCCCATCGACTGTACACTGGACAGTCACTGTTACCATAGTAGCACTGCTGCCCATCAAAGCAGCAGTTTATAGCACCACAGTGGGAAGCATCCAAGCCTGGTTCACCACAGGGAATCTTGTCAGAATCATCCAGATTACATTTATCAGCAGTAGTTACCTGTACCTGAGGATCAGACCCTGGTGGTAACAGCCCAgaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggccCGGAAGGTTGGGGAGCCAGAGGCCCAGAAGGTTGAGAGGGAAGTTGCCAAGATGGCTGAAAAAGAAGTGGCCCAGAAAGCTGGGGAACCAGAGACCCAGATGGCAGCCCAGAAAACTGTGGGGTTTGAGGTTGTTCCTCTGATAGAGCTCGAGGACTCCAACGAGCTACAGCTGCATTGCTCACAGAATTCAACCAAAGAACCACAAATACAATAGAACCCCACATTTTTCTCTGTGCTTCCagcaaaaaacataatggtccaTGTTTCTGCTGACCTT
>TU187940
ACCTCAATAAGCTAGCAATAAAAGGTAGTCCATGACCCACATTACCATTCTGACTGCAATGGGTTAAGAGAAAGACACACAATTCAAAAGCAAGACCCCTTTATTGAGAACAGAGTCACAATCAATCCTGCTGGAGCTGGGCAGTTTGTGTGTAAATCACTTCTCCACTAGACACAACTGATTCAGGCTCCGATTTCCAGGCAACCGATCCAACATCTCTCCTCCTTCTATCGCACTTTTGTTCACAAGCGGCACCTGCAGTTGGAGAGCACACAGCTGTGCTGCAGTGGATGTAGAtCGTCTCTTTCAAGGGGTTCATAGAACGATCCACAAATGTGAACATCTTGAGGACAAAGCGCTTGTAATGGCTGGGGTACTGAAGTCCAGATGACCCATCAACTGGAACCAGGGTGGTCAGGTAGCGATCATCCTTGTTCGGGCACCCATTCACCAGAAGATCCCACTGAGGTACACTGTCCCGGTCAGGTGTAGAGGTTGCCCAACAGTGTCCCAAGACCAGGACCAGATTGGGATCAGTTCGCCCCAACATGCGCACCTCAACGTATACAGGCTCCCTCAGGACCTTGGTCACAGGGTAGTCATTTTCAGCATAGTAGGAAGTATACGCTACTTGCTCTTCCACACAGCCCTTTGTCACACACTGACCATTGCCAAGCCTCAGCTCTACCCTGAGCGGGCCAGAAGCCATTAAAGGTAGAGGAGGATCATTGGAAGAAAGTGCAACAGCCAGGGACTCGACACTTGTAGCAGAATATCTACACTGGAAGTAAAGCTCGTAGTGGCTGTCTCTTGTGATGGAACCAAGGGGTCCCACACCAACTTCATAGGAAGACACCATTTTGTTCTCATAGACCACATAGTCACTAAACACCATTGCGTTTGTTCCACAAGCAGTTACAGGAAACTGGTATATAGCAAAGTCAGCATTATAGTCCACAACAGCACAGGGCCCATCACTTCCTCCCAACAGGCTGATGGAATCCAAGCTGATCCTAGGAAGTGTTGTATTCCGGGCCACCACCAAAACAAACTGCCCATCGACTGTACACTGGACAGTCAcTGTTTTACCATAGTAGCACTGCTGCCCATCAAAGCAGCAGTTTATAGCACCACAGTGGGAAGCATCCAAGCCTGGTTCACCACAGGGAATCTTGTCAGAATCATCCAGATTACATTTATCAGCAGTAGTTACCTGTACCTGAGGATCAGACCCTGGTGGTAACAGCCCAgaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaaagtggccCGGAAGGTTGGGGAGCCAGAGGCCCAGAAGGTTGAGAGGGAAGTTGCCAAGATGGCTGAAAAAGAAGTGGCCCAGAAAGCTGGGGAACCAGAGACCCAGATGGCAGCCCAGAAAACTGTGGGGTTTGAGGTTGTTCCTCTGATAGAGCTCGAGGACTCCAACGAGCTACAGCTGCATTGCTCACAGAATTCAACCAAAGAACCACAAATACAATAGAACCCCACATTTTTCTCTGTGCTTCCagcaaaaaacataatggtccaTGTTTCTGCTGACCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187927 False 1485 TUCP 0.48 6 4243998 4245864
TU187928 False 1486 lncRNA 0.48 6 4243998 4245864
TU187937 True 1705 lncRNA 0.49 8 4243384 4245864
TU187938 False 1089 lncRNA 0.47 5 4237609 4245864
TU187940 False 1648 lncRNA 0.49 9 4243384 4245864

Neighbor

gene id symbol gene type direction distance location
LOC103022774 NA coding upstream 83090 4142096 ~ 4154519 (+)
ccdc39 NA coding upstream 142167 4081012 ~ 4095442 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 157505 4075488 ~ 4080104 (+)
LOC103033521 b3gnt5 coding upstream 172135 4052730 ~ 4065474 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 190970 4022436 ~ 4046639 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 61784 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 93219 4339083 ~ 4344329 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 139754 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 399137 4645001 ~ 4658142 (+)
LOC103038785 NA coding downstream 468251 4714115 ~ 4719644 (+)
G138840 NA non-coding upstream 82 4236669 ~ 4237527 (+)
G138748 NA non-coding upstream 62024 4172771 ~ 4175585 (+)
G138758 NA non-coding upstream 123491 4104980 ~ 4114118 (+)
G138747 NA non-coding upstream 165521 4068787 ~ 4072088 (+)
G138744 NA non-coding upstream 197751 4036371 ~ 4039858 (+)
G138863 NA non-coding downstream 105517 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 108978 4354842 ~ 4355190 (+)
G138866 NA non-coding downstream 110023 4355887 ~ 4356137 (+)
G138867 NA non-coding downstream 112033 4357897 ~ 4358171 (+)
G138868 NA non-coding downstream 113298 4359162 ~ 4359420 (+)
LOC103023077 NA other upstream 65599 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 135368 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 398237 3801853 ~ 3839372 (+)
G138701 NA other upstream 403149 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 1118121 3115420 ~ 3119488 (+)
LOC103026815 LOC108428843 other downstream 427516 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 457482 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 644009 4889873 ~ 5007006 (+)
G139154 NA other downstream 1209616 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1813553 6059417 ~ 6060050 (+)

Expression


Co-expression Network