G42692


Basic Information

Item Value
gene id G42692
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1785501 ~ 1788634 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU48453
CAAACATATAACATGCTAGAAAAATAATAACCACTGTAATAATGATCCATCCATAGACTCTTAAGTATTTGCCTATTAAAATCCAAACAGCGACTTTTTTTTGGCCGGGCAGTGTTTATTTGCATAATTGTTTTAAATGAATTCAAATTGTTACTTAATATAATTATTTAAAACATGTTCCACTGACAATTCTTCAAATTCCTATGACACTTCCAGGCTGTCCACAGGATTTTTGAGATTATGAATCATGCAAGCAGTTACTAACTTTGCGATCTTCTCCTTAAGTGCCCCCCAGTCCCACAGGTCTGTAGGTGTCTTTTCCCACATATCATACTGCAGGATGCCCTTGCTCACAGGAGACCCAGCGTAGGTTTCATACGGTCCAAATTCTGCAGCCAGCTCACAGCTGGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGTGTGTTGAGAAGCTGAGCCTCTGCACTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGACCCTGAACACCAATCCCAATGGGCCTATGACGCTTGTTGGAGTTCT
>TU48454
TCTGAAATTCCCAAATTCTTTATTGTATACAGAAAAGTAAATACAAATATTTCTATAATTATTCTCTATGCCCACTTAAAAAAAGATTCTGTACAAGAGGAAAAGTGTTAACCATCCTATCGATCCTCGCTGACGGCAGAGGAGTTCAGTTTACGAACCGCACATCAGACATTCGTCACGGTTCTCCAGCGAGCACACCATAGCGGCTTTGTTGCGTTCTTTGGTTTCCTCCTCACTTGTACTTTTCTGCGTCTCCTTCAGTTTCTCTTTGTTCAGAGTGAACTGGATGGGGTTGGCGGCTGGTTTAGTTCTCAGGTAGTACATTCCTGTTTTAAGACCCTGCTTCCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCTATGTGGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGACAGTCTTTTGAGAGATTTCCCACACAGTCTTATACAGCTCCTTCAGGTCATCTGGTATTGTGGGAATGCCCTGGATGGATCCGTTCTGAGCAATTAGCTGATTTTTCATTTCCTCGTTCCAAAGTCCTCGTTCCGTGAGGTCTTTGAGAAGATGTGGGTTCACGATCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGTTCGATTGACTCATTGTTGCCCAGGATCTGAGCTGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACGCACACCATGCTTTGCGATCTTCTCCTTAAGTGCCCCCCAGTCCCACAGGTCTGTAGGTGTCTTTTCCCACATATCATACTGCAGGATCTGTGAAATCACACCAGGAACAATTAGAGCTCTGTAAACGTCAACTAATATCCAATTTCCACACAATAATATTTAACTTACGCCCTTGCTCACAGGAGACCCAGCGTAGGTTTCATACGGTCCAAATTCTGCAGCCAGCTCACAGCTGGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGTGTGTTGAGAAGCTGAGCCTCTGCACTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGACCCTGAACACCAATCCCAATGGGCCTATGACGCTTGTTGGAGTTCT
>TU48457
TCTGAAATTCCCAAATTCTTTATTGTATACAGAAAAGTAAATACAAATATTTCTATAATTATTCTCTATGCCCACTTAAAAAAAGATTCTGTACAAGAGGAAAAGTGTTAACCATCCTATCGATCCTCGCTGACGGCAGAGGAGTTCAGTTTACGAACCGCACATCAGACATTCGTCACGGTTCTCCAGCGAGCACACCATAGCGGCTTTGTTGCGTTCTTTGGTTTCCTCCTCACTTGTACTTTTCTGCGTCTCCTTCAGTTTCTCTTTGTTCAGAGTGAACTGGATGGGGTTGGCGGCTGGTTTAGTTCTCAGGTAGTACATTCCTGTTTTAAGACCCTGTGGAGAGAAGTAGACAGACTATTTAGCCATCAACTCTAATTTCTAAACTTCCAAATCCAGGCTCATGAAGTATCTAGTTTACCTGCTTCCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCTATGTGGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGACAGTCTTTTGAGAGATTTCCCACACAGTCTTATACAGCTCCTTCAGGTCATCTGGTATTGTGGGAATGCCCTGGATGGATCCGTTCTGAGCAATTAGCTGATTTTTCATTTCCTCGTTCCAAAGTCCTCGTTCCGTGAGGTCTTTGAGAAGATGTGGGTTCACGATCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGTTCGATTGACTCATTGTTGCCCAGGATCTGAGCTGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACGCACACCATGCTTTGCGATCTTCTCCTTAAGTGCCCCCCAGTCCCACAGGTCTGTAGGTGTCTTTTCCCACATATCATACTGCAGGATGCCCTTGCTCACAGGAGACCCAGCGTAGGTTTCATACGGTCCAAATTCTGCAGCCAGCTCACAGCTGGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGTGTGTTGAGAAGCTGAGCCTCTGCACTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGACCCTGAACACCAATCCCAATGGGCCTATGACGCTTGTTGGAGTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU48453 False 560 lncRNA 0.40 2 1785501 1786141
TU48454 False 1136 lncRNA 0.47 5 1785501 1788634
TU48457 True 1140 TUCP 0.47 5 1785501 1788634

Neighbor

gene id symbol gene type direction distance location
CI01000006_01741474_01759775 NA coding downstream 24398 1741014 ~ 1761103 (-)
CI01000006_01695152_01695781 RHOGB, RHOG, RHOG.S coding downstream 89720 1695145 ~ 1695781 (-)
CI01000006_01597661_01606545 ST6GAL1 coding downstream 178585 1597378 ~ 1606916 (-)
CI01000006_01531182_01543508 NA coding downstream 241993 1530981 ~ 1543508 (-)
CI01000006_01368608_01388697 NA coding downstream 396804 1368608 ~ 1388697 (-)
CI01000006_01790786_01803089 TRPC2A, TRPC2B coding upstream 565 1789199 ~ 1803089 (-)
CI01000006_01806389_01811758 NA coding upstream 16818 1805452 ~ 1811758 (-)
CI01000006_01825754_01835213 CLCN5, CLCN5A coding upstream 36292 1824926 ~ 1835213 (-)
CI01000006_01864365_01882955 NA coding upstream 75731 1864365 ~ 1882955 (-)
CI01000006_01884281_01887304 RAB38C coding upstream 95197 1883831 ~ 1888374 (-)
G42693 NA non-coding downstream 1435 1783205 ~ 1784066 (-)
G42694 NA non-coding downstream 8363 1776685 ~ 1777138 (-)
G42691 NA non-coding downstream 23994 1761167 ~ 1761507 (-)
G42658 NA non-coding downstream 54174 1702230 ~ 1731327 (-)
G42661 NA non-coding downstream 104479 1680160 ~ 1681022 (-)
G42714 NA non-coding upstream 51842 1840476 ~ 1840809 (-)
G42721 NA non-coding upstream 127654 1916288 ~ 1916496 (-)
G42739 NA non-coding upstream 180920 1969554 ~ 1969779 (-)
G42744 NA non-coding upstream 188053 1976687 ~ 1977230 (-)
G42759 NA non-coding upstream 251465 2040099 ~ 2095847 (-)
G42285 NA other downstream 1429362 355813 ~ 356139 (-)
G42667 NA other upstream 100354 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 496198 2284994 ~ 2296494 (-)
G42934 NA other upstream 780279 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 781140 2624436 ~ 2626776 (-)
G43102 NA other upstream 1119817 2908451 ~ 2933984 (-)

Expression


Co-expression Network