LOC103042278


Basic Information

Item Value
gene id LOC103042278
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1869474 ~ 1915019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229162.3
acacacacacacactcaacttaAACAGACTTATGGGGGACATCTGAGCCCCCGGATGCTGCCGCGCGCTGGTTCAGGCAGGACCGCAGCGGAGGATTAGTTTCTGTTACTGTTTTTAAcagaaaacattgttttttctgCTGCTCTTCCTCCTCGGCTCGCGCTGCCTCTCAGGATTGGACTCTGCTCTGCTCACGCGCTGCAGGATCGTGGGAAAACTCGACGGGGTCTGTCTGCGCGTGGGAGGCGGTTTTAACTGGACTGACAGAGCTGTTGAGGTGGGTGCATTTGCTCGTGCAACTGCTGGGAAATTTGTACTTAGCTGGACGCTCTCGTGCGCGCGGGGTTGCTTCATGCAAACCCCTCGTTCACCAAGACCAAGAGGAACACCAACACCAGCTTTTTATTGGCATTGCAATCTTTTGAGTTCATGTTAGTGCATTGCAGTCGTGCATTGCATTGCAACTAAGCTGTGTTTGGAcgtttgtttgcttgttgcttgTTTTCTTGCCTGTGCGCGTGGGACTACTTTTTAACACACCACCATAAGACCAGCTTTAATAAGTTGTATTTGGGCCTTTAAAGATATAGCGTTAGCTACCGTACTCTTAACGTTACTCAAGCAAGGCCAACAGCAGAAACACCAAGCCTACTagaattgcattgcattgcactGTAACCAAGTTgggttttttaatgtatttatttttttcattaattatttGAAGCATTGCATTGCAGCAACTGAGCTTGAGTGTTTTAGACgctttttgcttctttttttacacgtgggattatttttttttttttgttttgcaccagagttttttttatagttgcaTTGTATTGCAACTGAGTTGTATTTGGAcgttttttatgtatatgtgtgcGTATGTGAGCTACACCAGCCAACACCAACGCTTTAatagtttttcattttagtgtaTTGCATTTGGCATTGCATTGCAGCTGATCTGTATTTGGGCCTGGGATTGGTCCATGCACCTctaacatcatcatcatcattaccatcACGACCAGAACCACGTACCAGCACCTTACTCGCTAGCATCAATCACAACGACGAAAAGCGAGTTtcgtttttataattttttaattaattgcattgcattgcaacTAAGTTGCACGCAGATTTTACGCAAATCGTGCACACAGAAAATGCAATGATTTGCAGCCTTGCCTCTTAACAAGACATTTGATTGCATTGGACATTGCATTATTTCTAttagtgtgggtgtgtttgcTGTTGCTCTCTCGTGCACCCGTGCAACATACATTGGGACACCACCGACAGACATGGCCAGCAAAAACGACATGGTGGTGTACGACAGCCGCGGCATAGTGGAGAACTATCTGCACCACAAGCTGGCCAAGAGCGGTCACGCGTGGGAGCTCCACGagcaggatgatgatgatggagaagaggagaagaagaagaggaggatgaagaagaagaggggAAAAGGGTGCATCCAGCTCCACCGGGTGCACGGAGCTCTGCGCGAGGCTGGAGACGAGCTGGAGCGGCTGTACCGCTCGGATCTGACCGACATGACCGGGCGGCTCGAGCTGGAGCCCGCGGGCGCGCGCCGGAGCTTCGCGGCGGTGGCGGACGAGCTGTTCCGGGACGGGGTGAACTGGGGGCGGATCGTGGCGTTCCTGGAGTTCGGCGCGGCCGTGTGCGTGGAGCGGAAGCGGACCGCCGCCGAGGGCATCACCGCGGACGTGGCTCGCTGGATGACCGAGTACCTGAACGGACCGGTGCTGAGGGGGTGGATACGGGAGAACGGAggatgggATGCCTTCGTGGATCTGTACGGCCGGCAGAAGGACTCAGTATTCGGCAGCTCTTGGCCGTCTATAGTGACGGTGTTCAGCCTGGCGGCACTGGGGGCCGTGGGCTTCACTATAGGAGCGTACCTCGCTCAGAAATGAACATCTTCcccatctttttctctctctctctctctgcctctcttctctctctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229162.3 True 2011 mRNA 0.50 3 1869474 1915019

Neighbor

gene id symbol gene type direction distance location
kdsr kdsr,LOC106569188,LOC102792240 coding upstream 8959 1855297 ~ 1860515 (+)
LOC103043726 LOC103043726,LOC105899208 coding upstream 52262 1810725 ~ 1817212 (+)
tsc22d2 NA coding upstream 67155 1777225 ~ 1802319 (+)
LOC111194259 NA coding upstream 123236 1740171 ~ 1746238 (+)
LOC103022156 NA coding upstream 133571 1723535 ~ 1735903 (+)
dpp6 LOC108430761,LOC108267703 coding downstream 187202 2102221 ~ 2230065 (+)
LOC103042593 LOC108430758 coding downstream 407019 2322038 ~ 2362870 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding downstream 480938 2395957 ~ 2405369 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding downstream 507889 2422908 ~ 2431028 (+)
LOC103041271 LOC108430753 coding downstream 550312 2465331 ~ 2473513 (+)
G137889 NA non-coding upstream 59862 1808205 ~ 1809612 (+)
G137890 NA non-coding upstream 63294 1804927 ~ 1806180 (+)
G137827 pfn2,pfn2l,LOC107681776 non-coding upstream 99284 1762038 ~ 1770190 (+)
G137880 NA non-coding upstream 148520 1720742 ~ 1720954 (+)
LOC111194188 NA non-coding upstream 232809 1633487 ~ 1636665 (+)
G137831 NA non-coding downstream 1128 1916147 ~ 1918411 (+)
G137902 NA non-coding downstream 6534 1921553 ~ 1924855 (+)
G137917 LOC108430762,LOC108267465 non-coding downstream 72795 1987814 ~ 1988466 (+)
G137930 NA non-coding downstream 110174 2025193 ~ 2028808 (+)
G137943 LOC108430760 non-coding downstream 292348 2207367 ~ 2237690 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 18161 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 369518 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 829504 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 880836 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 1088278 762715 ~ 781196 (+)
G137929 NA other downstream 107736 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 985456 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1167037 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1200401 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1886834 3801853 ~ 3839372 (+)

Expression


Co-expression Network