LOC103026425 (zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829)


Basic Information

Item Value
gene id LOC103026425
gene name zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3127745 ~ 3142947 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250661.3
TGCGTGGTGTGTCtacgcgtgcgtgtgtgtgtgtgtgtgtgtacgcagtGAAGGTAGAGCGGCTGCTCTCTGGGGAAGCgtctcacacactgcagtgCTAGGCAGGGCTGTTGAGGCtgttgatgctgctgctgctgcactctGCCATGCTGAAGGATGGTGCACCAGGAGAAATGCCTTTACCAGgcccAGAGGAACGAGAGGGAGTCGATCAGGCAGAAGCTGGCCCTTGGCAGTTTCTATGACGACGGACCCGCTTTCTTCACTGGCTGCAGCAAGGGTGGCAAAAACTGCCTGTCCTCACGGCTTCAGAATGGGGTGAATCTGCAGATGTGCTTTGTGAATGACAGCAGCAGTGATAAGGACAGTGATGCGGAGGACAGCAGGACTGAGACGAGTCTGGACACTCCCCTGTCTCCGATGaGTAAGCAGAGCTCCTCCCTGTCGGACCGGGACACGGGGGAGGAGGACTTGGAGCCGGAGGACTGTGAGTTCTGGCGGGTGCAGCGGCGGCTGCAGGAGGAGGCCCGGGGGGCTCTGGCCCTCGCTCGGCCCATGGCCCGAATGCAGGTGGAGGTGGAGAGACAGATCCAGATGCACCGGCGATCCCCCGTGGCCGACTTGcTGCCCCACCTGCCACACATTAGCGAAAGTCTGATGAAGAGGAGCCTGAGGCCCATGGACCTGAGGGACATGAGTCTGGGTCAGCTACAGGTCATCACCAATGACCTTCATTCACAGATTCAAGGTTTGAATGAGGAACTggtgcagctgctgctgctgagggaCGAGCTTCATGTGGAGCAGGATGCCATGCTTGTGGATGTGGAGGATTTGACCAGGCACGCGCACAGTCAGCAGAGACACGTGGCAGAGAAGGCCCTGGCTAAACGGAAAGGCGCTTGCTCCCTGTGACCCCACTGCCTCTCCACGGCCTTCACAGCACTGGATAGCGAAGGCAGAGATGTTAGCACTTAGTGTTGTGGTAGCGTACGCACCAAGGTTTACTTTCTGTCCGTTTTCACTTAGACGTGCGTGTCTCTTTTCCCCTCGTTGCAAACTTTGTGTGGATGTATGTCGGTTAAACAAACACGCCGTGAGCTTGTGCATGCCCACACCGAAGCAGAGCGACAGGCTCCGCCACGTAAAAGAACCTAACACGCCAAGCTAACGGTTTAACAGCCGCTACCGAAGTCTCTATAGGCACCTGGATCGTTAAAgtgaatgttttttatttttattcttcttcaAAATAGTTGTACCGATGACATTCTTATAATGTCCTTCGCAACATGCAGATTCCTCTCTGGCTCTTTTGCTTGCTGATGTTCACGTAGCTTAAAGCAGGGtggagaaaataataataaagctaatAAAGTGAGCTAGCCATCCATCGGCGTGAGCCGTCTTTACTGAAAGGGAGGTAGTTGGATCAAACAGTAAGCACTTTCACACTTTGTTGTTAGTGAGGTTGCCAGGTGTGGTCAAATACCactcgctgcagaaccacaagtcccacaagtccagggggtggggaTGTTTCTGCAGCGACGACCCACTCTCAGTGTGGTGGTAGTTACCTCTTGTGTTCATAATGAACTGTAATGACAGTATTTAaagaatgttttctttatttttcaccCATTTGAGGGATATATGTGTgggtaaatgttaaaacgtTACTGAAATGTTGGTGTATAGAACCAGatcaataaatgatttaatgaaCTGTCAGCTGAAGAATGTCACAATATcataaaacacagttctaaaaGGAAGTCACTAAAAGGAAAATTTAGTGGAAAATCAAGTGAATATGATTGATCACTGACCACAGAATCAGTTAGTCAGCTGACTAACCAagacatgtttaatatctgatgtGTGCTAAGAAGGGGAGgctaggctaatgttgctaacaggTAAATACATGTAATAATTTGGAAGTAGTTGTTGCTAAATACAAGTGTGTTCATGCTATTTATCGTGACTGATGACAGGTGGGGAGCCATCTTTGTTTATTACAGAAATAGTCAATGTGTGTTGGAGGATGCCAGCACAAAAAGATCAGTGTTGTGGGGCTTCCATTCTCagcttaaatgtttaaaaaggttTATTCATGCTGTTTTACAAAAAATCCTGAATGTTTAAGGAAATGAGGACAGTCTTTGTTAGCAAGTCCAGTGTTTGCTAGCCTagcattagcctagcatctcctgTTCTGTCATCTGTGGTCATTAAACAATCATGCTCACTTGATTTTCTCCAAATGACcacagtggccagtgagtgaaacctatatatgttttattataaagtgagaattGTTTATCAAATGTGCAATAAAGGCAAATGCTATGAATTA

Function

symbol description
zgc:153615 Predicted to be involved in positive regulation of hippo signaling. Predicted to be active in cell junction and plasma membrane.

NR:

description
schwannomin-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250661.3 True 2365 mRNA 0.48 7 3127745 3142947

Neighbor

gene id symbol gene type direction distance location
LOC103045957 LOC103045957,LOC108430690 coding upstream 19241 3105446 ~ 3108504 (+)
LOC103024237 NA coding upstream 57794 3063927 ~ 3069951 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding upstream 77969 3038419 ~ 3049776 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding upstream 102232 3017580 ~ 3025513 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding upstream 149300 2943136 ~ 2978445 (+)
LOC107197652 NA coding downstream 4300 3147247 ~ 3149780 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding downstream 7929 3150876 ~ 3156054 (+)
LOC103046575 LOC108430689 coding downstream 44785 3187732 ~ 3193555 (+)
cope cope,LOC107690966 coding downstream 51601 3194548 ~ 3200085 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding downstream 67613 3210560 ~ 3289693 (+)
G138123 NA non-coding upstream 13130 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 130668 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 228214 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 232335 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 264457 2862962 ~ 2863288 (+)
G138524 gipc2,LOC108430720 non-coding downstream 13809 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 113954 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 349749 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 361629 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 381684 3524631 ~ 3526308 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 8257 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 42880 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 191616 2900475 ~ 2936129 (+)
G137929 NA other upstream 1103359 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1276432 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 658906 3801853 ~ 3839372 (+)
G138701 NA other downstream 690308 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 953050 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 1022996 4165943 ~ 4172010 (+)
G138839 NA other downstream 1094662 4237609 ~ 4245864 (+)

Expression


Co-expression Network