txndc12 (txndc12,LOC107690994,LOC107566463,LOC107708672)


Basic Information

Item Value
gene id txndc12
gene name txndc12,LOC107690994,LOC107566463,LOC107708672
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3150876 ~ 3156054 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250662.3
ATGGGCAGATGTTCCTCATGAACCCATGAACTCCTGGACTCCGTCCCCCTCAGGCAGCTGCTGGATCCGCCGCAGtggctccctctctctctctgtctgcgtTAAGGCCTGAGTGAAACCATGCAGTCCTCTGTTCTCAGCGTCGCTTTGCTCTCGTTTCTACCATTTTTCATCGCCACGCATTTTAAAGGAGTTTCTGCTGACGGGAGCGGGAAAGGATTTGGAGACCACATCCACTGGAGAGGTCTGGAGGATGGAAAGAAAGAGGCTGAGGCAAGTGGCTTGCCTGTTATGGTCATCATCCACAAGACCTGGTGCGGTGCTTGTAAAGCGCTGAAACCCAAGTTTGCTGAATCTAAGGAAATCTCAGAACTGGCTCACAACTTTGTCATGGTTAACCTGGAGGATGAAGAGGAGCCCAAGGATGATGCGTTCAGCCCAGATGGAGGTTACATTCCCAGGATACTGTTTCTAGATCCCAGCGGTAAAGTCCGCCCTGAGATCACAAACAAGAACGGAAACCCAAACTACAAGTTCTTCTACAGTAATGCAGACCAAGTTGTAACCAGCATGAAGGAAGCTCAGGAGAAGCTGACTGGAGATGCTTTCAGAAAGGCTCACATTGGTGATGAGCTGTGAGAAGTTCAGCCGTTACACTACATCACTTTCAAACCACTCTTTGCACTGGGGCCAGCCCAAACCCTCAATCTCCTTCAACTCctcattttattctgtttatgtgGTCCACTATTTCAGAACCCTCCAAAACAAGTGCAGTCACACTCCACCTCTTCCATGTTCAATGCTTTCAGTTGCTGCTGTTGTTATTATTGCCAGTTAAAAGTACCAGTTGTCCGTTAAATGGCATCAAATTGAACCAAAGCGTTAATAATTATTCGTAGTTTATATGTCCAGGATGCAAATGGGATTTGTTCACATGGTTCAGAATGGGATTTCTGCTGCGGTTCTGTTTGTTAGACCTTCTTGTATGTGTTAAGTTGACCTCAGAGCAATATGTTTGCATTGCCCtcctattacattacattttaacagACACTTTCGtggaaaatgggggaaaaaaaactactgaATACACTTGAGCAGATAAGACGATGAACCTGCTATCACGTGCTTCCAATCTCCATCTCATGCTGCAAACTGACTGTACGGTAGGCAGCCACATGAACTAAGGGCCTTACATCCCGCTCCCTCCACAAGTGTGATGAGCTTAAGTTTTGTatttctaatcataaattctaaaataataaaaatgatgagattaTTGTAAACAAGTATATTTCTTATCCTGCCAATTTGTGTAATTTCAACAGCATTATATGGATCTAGGATTTGCCTCTGGTTTtataaatattcagatttttactGTAGACAATGCTTCGAATCGGAAACGTGAAGGGCCAGTAACACAAACTGGTTTAAAGTGTTTTCTTAGGATGGAATTATCTGTCCGAAAGTGTCTTTTtccatactgtattttttacatgtatgtatgtaagtataTGGCCAAGTGTACAATTAAAGTTGGTACTTGATTAAAGTTA

Function

symbol description
txndc12 Enables protein-disulfide reductase (NAD(P)) activity. Acts upstream of or within DNA damage response, detection of DNA damage and detoxification of hydrogen peroxide. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; digestive system; immune system; pectoral fin bud; and ventricular zone. Orthologous to human TXNDC12 (thioredoxin domain containing 12).

NR:

description
thioredoxin domain-containing protein 12

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG:

id description
K05360 TXNDC12; protein-disulfide reductase (glutathione)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250662.3 True 1562 mRNA 0.43 7 3150876 3156054

Neighbor

gene id symbol gene type direction distance location
LOC107197652 NA coding upstream 1096 3147247 ~ 3149780 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding upstream 7929 3127745 ~ 3142947 (+)
LOC103045957 LOC103045957,LOC108430690 coding upstream 42372 3105446 ~ 3108504 (+)
LOC103024237 NA coding upstream 80925 3063927 ~ 3069951 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding upstream 101100 3038419 ~ 3049776 (+)
LOC103046575 LOC108430689 coding downstream 31678 3187732 ~ 3193555 (+)
cope cope,LOC107690966 coding downstream 38494 3194548 ~ 3200085 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding downstream 54506 3210560 ~ 3289693 (+)
st6galnac5 st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846 coding downstream 155107 3311161 ~ 3361634 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding downstream 261372 3417426 ~ 3477561 (+)
G138123 NA non-coding upstream 36261 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 153799 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 251345 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 255466 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 287588 2862962 ~ 2863288 (+)
G138524 gipc2,LOC108430720 non-coding downstream 702 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 100847 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 336642 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 348522 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 368577 3524631 ~ 3526308 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 31388 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 66011 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 214747 2900475 ~ 2936129 (+)
G137929 NA other upstream 1126490 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1299563 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 645799 3801853 ~ 3839372 (+)
G138701 NA other downstream 677201 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 939943 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 1009889 4165943 ~ 4172010 (+)
G138839 NA other downstream 1081555 4237609 ~ 4245864 (+)

Expression


Co-expression Network