LOC103038785


Basic Information

Item Value
gene id LOC103038785
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4714115 ~ 4719644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250701.3
AACGATGTAGAGCAGACTCTCTGTGATCCTGTTTCCACAGTAGAGGGTGGAGCCTGGGTGGGTGTAGGGTGTAGGCCTGAGCTGTAAGGCTCTGCAGAGGGAGCAGCAGTACAGGTCTGCGGTGTCTGAGAGGAAGTCTCTCCTGAGTCACTGAGGAGACGATGAGACGATGAGATATCTAGTATCTGTCTGGTTGATGAAGTGACACCTGAACACCTGTAATGGAGGTCGCCACAGAGGGACAGGAAAATGCCGGGGGACCACAGCATCCCCCCAGGTTTAACACACACAGACGCTGGAAATCTAAACTTCACCTGCTgccgaagaagaagaagaagcttcCAGTATCAAACCAACCAGAGAGACGGGAATTATTATACAGaccAACCCAAAGTGAAGTGCAGCAGTGGGGTCAGTCTCTGGAGAAGCTTCTCGTCCATCCGTGTGGAGTGCTGGTGTTCCAGATGTTCTCGAAGTCAGAGTTCTGTGAGGAGAACCTAGAGTTCTGGCTGGCCTGCGAAGACTTCAAGAAGAGCAAGACATCAGAAACACTCGCCATCAAAGCACAGAATATTTATGATCAATTCCTCAGGAAAGACTCTCCGAAAGAGATCAACTTGGACTTTCGCACCAAAGAGCATATTAACCAGTGTCTCCAGCAGCCGTCCTCTAACAGTTTCGATGAAGCTCAGAGAAGAATCTTCTACCTGATGGAGAATAACAGCTACCCTCGCTTTCTTGAGTCAGACTTTTACCAAGGCCTGAGTAGCTCTAAGGGGCTACATGGACCCCATAAGCCACAGTGCTGACCATGAACTGTGAACTGTGACTGACTGAGGAACTTCAGAGGTTCAGCTCTGCTTCAGCACAGCTAACAGTAGCACAGCTAGCATGTGTAGCATAAGGCTGGGCCGCATTTGAAATGTAGTAGCATGCTGTTGCTCAGGgatgtagtgtgtgttttttcatttttatttttatttttttctattttagtaTCAATCATGGTCAGGGAGGAGGTCTCAGAACAAAGACAATGATACcatggaccaatcacagccagTAGAAGGTGGGAAGTCAACGTCTTAACTTTAGCTgcccagctaacaatttttggttatTAGAAAGCTGTCTGAACGTTACAGTTGACGTTCTTAGAAGGATCAATCTGCCAAGTTTTCTAGATGTTCTCagaacatgtttatttaatggtTTTAAACATTCTGGAAACATAGTAACttgtgtcaattttttatatttttaactgggaatgttttatcttttaacattttcacaacattatttctgtaatgttacaggctaCCCTTCctgaaaccttttaaaaaacgtttttaaaagttcttataatgttctctAATAGCTAGATGGGTGGTCAAGAGAACCAGTCAGAGGAAATGGTCAGTGGGAGGATCTCAGATCAATGTTCTTATTAGGTCCAATCATAGTTAGTAGAAGTCTCAGAACAAGCAAAGAAGCAGTGACGAGAACCAATCAGAGACATGGAGAGGTTTGTGTTTCGGTCATGACTCGGTCGTGATTCAGCCCAATTCAAATCATTAGGACGATTCATAACCAACTCTGTGATGAAGGGGACCAATCAGAATCTGAGGGATGTCTTACAACAAAATCAGTAGTGGATAGGACCAATCTGATTCAATGGTAAAGCTTTTCTTCCAAAAGAACTCCATTTGGGCTTCTAAGGTTCGTGATGCTTTTTATTGAGCTTTTCccccagttttagtggaacgatcaaaacatcacatcatatgtcatcaacagagggcgttGCACAGTGGTGGTGAGCAGAAGAGGTCATGGTATTCTTCGGTTCCCTCTGCGAACAAATGTTCCTGGTTGAAAAACCttcttttgttggtggaaacgcaACAAACCGGTTCAAAATAAGGTTTACGAACCAGAATTGTGCCGGTTCCAATTTTGGAAAAGTAAAATGGGAGGTCTCAGAACCAGCTTGGTGGTGAAGAGGGACcaattaaaatctgttattcTGATGTGTCAGAATAATCATGATAGTCAAGAGTGGACtaccaatccatccatccatccatccatccatccattcatccatagCCTGTTTGCACTAGGGATACATTTCCAAAGAGGACTACAATGCTGTGTTtgacataaaatataaatgtaaatcttaaaaacttcgaaagtatcctcaagtgcagtcacaaagaccatcaaaaacgttatgatgaaactggtccTCATCAGGAAGAGCAAGCGTTCCCTCTGTTATACAGGATAAGTTGCTCAGAGTTACCAGCATTGGAACAgccccccagataagagcacctaaatgcttcttcacagagtattttggtttgtttaacactttttagttactacatgattccttatgtgttccttcatagtttggatcaCTTTAATATTCCCTTACAATGTAGGAGAAAAGACTAATTTTGActaatactgtatgtaattatGCCTAATTTAGTTCCGACTCAGCAATGGGTACCATTATTGCATGGTAATGGCACTCTAAAGAtgctttttcattattattccccacatacacacataacctagctacgattacagcacttacaagccaaaaaCACCAGCCATTCCAAAACTGTATCATTAAACACTaccaaaatgtaaataaattgtataCAATGTAAACAATAATGCCAACATGTGTGAAAGAAGAGGACAGGTCCCGCTCCATGGATCCCTGCTGGAATGCGCATTGGAAACTAGCCGGCTAGTTTGTATAGCGCTAAATTCCTCATAGACTGAGATTCCTGAGAAAATGCGAAAGTGCGCTTGCACAACTTCCTCATGAACAGTACCCACAGCTCAGAGCCATGACTGATTTCCGGCTGATTCTACGCCTGATAACCAATCCTGCCTCTGACCAACTTCATGGGAAAGTAGCGAAGCAGATCTTTTACATTAATATGAAGAGTAGGTGCCTCTGGAATGAATGGAGGCTGGAAAATAAGCCATGTGAGAATGTGTTTAGCTGGAGCTCTATCATTATTCTGTTTAACTGTtagatattaattattcattaataaattatttgtgttgtttttatttgtaaaaaaaaaaagttttgtatttaaatataacaacagTGTACTTGAAccacagtatacagtatttacttGCTTAATCTTCTTTTCAGTGTACTTTGTAAAAGTGtactttatttggctgtgctAATTGTGTTCTGgtgatgtacttaataaaaaattagtaaaataaa

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250701.3 True 3283 mRNA 0.41 5 4714115 4719644

Neighbor

gene id symbol gene type direction distance location
LOC103026534 LOC108428888,LOC108268317 coding upstream 55973 4645001 ~ 4658142 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding upstream 320471 4385618 ~ 4393644 (+)
extl2 extl2 coding upstream 369786 4339083 ~ 4344329 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding upstream 387716 4307648 ~ 4326399 (+)
LOC103022774 NA coding upstream 559596 4142096 ~ 4154519 (+)
blvra blvra coding downstream 8823 4728467 ~ 4733915 (+)
LOC103039605 NA coding downstream 38198 4757842 ~ 4761690 (+)
LOC103040234 keap1a,LOC108428896,LOC107749088,LOC107678690,LOC107721712,LOC108268010,LOC107690048 coding downstream 104986 4824630 ~ 4854002 (+)
znf622 znf622,LOC107721690 coding downstream 288492 5008136 ~ 5016931 (+)
d2hgdh d2hgdh,LOC107749221,LOC107678686 coding downstream 298290 5017934 ~ 5026288 (+)
G138941 NA non-coding upstream 56731 4657060 ~ 4657384 (+)
G138925 NA non-coding upstream 187344 4526570 ~ 4526771 (+)
G138922 NA non-coding upstream 201309 4512596 ~ 4512806 (+)
G138859 NA non-coding upstream 315510 4397227 ~ 4398605 (+)
G138858 NA non-coding upstream 317164 4396080 ~ 4396951 (+)
G138944 NA non-coding downstream 15992 4735636 ~ 4737366 (+)
G138945 NA non-coding downstream 18247 4737891 ~ 4738436 (+)
G138969 NA non-coding downstream 70856 4790500 ~ 4790958 (+)
G138976 NA non-coding downstream 183229 4902873 ~ 4903590 (+)
G138977 NA non-coding downstream 188101 4907745 ~ 4936889 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 5452 4703346 ~ 4708663 (+)
G138839 NA other upstream 468251 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 542105 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 611874 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 874743 3801853 ~ 3839372 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 170229 4889873 ~ 5007006 (+)
G139154 NA other downstream 735836 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1339773 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 1426319 6145963 ~ 6155929 (+)
G139268 NA other downstream 1440076 6159720 ~ 6164164 (+)

Expression


Co-expression Network