LOC107197652


Basic Information

Item Value
gene id LOC107197652
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3147247 ~ 3149780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677692.1
ATGTCAAACTACAAGCAAGGAGAACTACAGTCGAGTTATGGCAGAGTTATTACAAGTCAAGCTTTTGGCAGCCTTAGAGGGAATTTTGTGGCCCTGCAGTTGAGTTTTGACAGATTTACTaatatttttttttgtggtttattTGCAGACTCCTTCCTTCTGCTCCTGTCTTCCTCAATATGGAGGCTGGGAGCTCCAAATCCTGTGGGATCACAAGCATCACCACTCCAGCTTGATAGAAACACTTGCAAGGGTCTTGCACGCTCTCTGCTTTGGAACGTGACAGAAACACTGGCAGACGACCAACTGTTCAGGGGACTGAACTGCACAGACCAGAGTGCCGAGCTGCATAACAGGACCCAGACGGTAGCAGTGTGCATTCCACAGCATTCAAAATGCTCAGAGGGCCAAGACTACACTTTCAATCAGGATGCATGCCTCCACAGTGTTCTGGAAGATCTCAAGCAGTTCCGAGCAACGTTTAAAGCCTACAGCGATCAAGGATATGTCCTCAAACAGACGGTGCTTAGCAGCATTGATGACCTCATGCAGAACTGCTTCTCTGCCACACAACTGGACAGCTCTCAAACACTGGTTTCCATGGAACATGAAAAATCCTTCAAGGGAAGACTGAAGCTCTGCAAAGTTTTGAAGGCCTTCCATATTCGTGTTATCACCATCAACCGAGTGGTGAACCATATCCTGACTTTGGACGCAGGAGCCAATTAATAATCACAAAGTTATAATTGATATGTGATATTcaggcaaacaaaaaaaaaatatgtttttgtcattttgacaAGCACAAGTTAGCCTCATTGTTTTAGGCTTTATGATATGCAGTACTGGTAGTGATAGTATTTAAacctcttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677692.1 True 874 mRNA 0.44 7 3147247 3149780

Neighbor

gene id symbol gene type direction distance location
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding upstream 4300 3127745 ~ 3142947 (+)
LOC103045957 LOC103045957,LOC108430690 coding upstream 38743 3105446 ~ 3108504 (+)
LOC103024237 NA coding upstream 77296 3063927 ~ 3069951 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding upstream 97471 3038419 ~ 3049776 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding upstream 121734 3017580 ~ 3025513 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding downstream 1096 3150876 ~ 3156054 (+)
LOC103046575 LOC108430689 coding downstream 37952 3187732 ~ 3193555 (+)
cope cope,LOC107690966 coding downstream 44768 3194548 ~ 3200085 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding downstream 60780 3210560 ~ 3289693 (+)
st6galnac5 st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846 coding downstream 161381 3311161 ~ 3361634 (+)
G138123 NA non-coding upstream 32632 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 150170 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 247716 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 251837 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 283959 2862962 ~ 2863288 (+)
G138524 gipc2,LOC108430720 non-coding downstream 6976 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 107121 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 342916 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 354796 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 374851 3524631 ~ 3526308 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 27759 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 62382 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 211118 2900475 ~ 2936129 (+)
G137929 NA other upstream 1122861 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1295934 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 652073 3801853 ~ 3839372 (+)
G138701 NA other downstream 683475 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 946217 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 1016163 4165943 ~ 4172010 (+)
G138839 NA other downstream 1087829 4237609 ~ 4245864 (+)

Expression


Co-expression Network