slc1a7 (slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788)


Basic Information

Item Value
gene id slc1a7
gene name slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2943136 ~ 2978445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677819.1
ATGGCTCTGGGTGCAGTATGGGGCCGGGTGAAGAATGTCTGCCAGCAGAATGGCCTCCTTATCATGTCTGTTATGGCCGTGGTGGTCGGCTGTCTGCTGGGATTCTTCCTGCGCTCCAAACACCTCTCCGAGCAGGAGGTGAAGTACTTCCAGTTCCCCGGAGAGCTGCTCATGAGGATGCTGAAAATGCTCATCCTGCCTCTTGTCGTATCCAGtttgatgTCTGGTCTTGCAGCCCTGGATGCGAAGTGCTCCAGTCGGCTAGGCATCATGACCATCTCCTACTACCTGTGGACCACCTTTGTAGCCGTGGTTGTGGGTATCGTCATGGTGATCATCATCCACCCGGGCGGGGCCGCGCAGAAGGAGGACTCAGAGGACAGCGGCAAGCCCATCATGAGCTCAGCGGACGCCCTGCTGGATCTTATCCGCAACATGTTCCCTGCAAACCTGGTGCAAGCAACATTTCAGCAGTACCGCACCAAGAGCATCCCCATCTTAAAGCCCAGGCCTACAGTCAGCCAGGACATAATGGAGACCACCACCAGGCGGATCTTCATCTACGGCATCCAGGATGACAACGGAACCGACATCCAGAACTTTTCTCTGGACTTAACTCCACCCCCAGACGTGGTTTTCAGATCACTCCCGGGAACCAGCGATGGCATGAACGTCCTGGGTATCGTCATCTTCTCCGCTACGATGGGCATTATGCTGGGAAGGATGGGACCCAATGGCAGTGCCCTTGTAAACTTCTGCCAGAGTCTGAACGAAGCTGTTCTGAAAATCGTAGCCATTGTTATCTGGTATTTCCCATTTGGGATCGTCTTCCTGGTGGCTGGGAAAATCTTAGAGATGGATGATCCGTCTGCGATGGGGAAGAAACTCGGCTTCTATGCCATCACTGTTGTCATGGGACTCGTTCTCCACGGCCTCTTCATCCTGCCTTCCATGTACTTTTTCATTACCAAGAAAAGCCCTATTGTCTACATTCGAGGAATTCTACAGGCTCTGCTCATCTCACTCGCCACTTCATCCAGCTCTGCCACACTGCCTATCACTTTCAAGTGCCTCCTGGAGAACAACCACATCGACCGGCGCATCATCCGCTTTGTGCTGCCCGTGGGTGCCACCATAAACATGGACGGCACTGCACTCTACGAGGCTGTGGCGGCCATCTTCATcgctcaggtcaacaactatgAGCTGGACTTTGGACAGATCATTACCATTAGCATCACCGCCACGGCGGCCAGCATCGGCGCCGCAGGAATTCCTCAGGCAGGACTGGTAACAATGGTGATCGTTTTGACCTCGGTGGGGCTGCCCACAGATGACATCACACTCATAATCGCTGTGGACTGGGCTCTGGATCGCTTCAGGACGATGGTGAACGTGATGGGTGATGCTCTTGCCACGGGTATCATGGCACACATATGCAGGAAAGACTTTATAAAGGAAGGCGAAGAGATCCCTCTCATTTGTGAAACCAAGCCCATGATCAGCATCCAGCAGATGATGTCCTACCAGAAAAACGGCTGCTTCCAGCCTCCTCCTCGAGGCCCCAGGATACAGGAGCCCCTCTCTCCGGACGTGGCTCGCCTCATGCAGCTAGAGGAGGGCATCCGGCCGGCCGAGAAGAAGAAATCCTCGCACCAACATAAGAAAGAAGACAAGGACCTGGACCACTGCACCATCGACATGAACGGCCTTGAGACCAACGTCTAGACTCCCTCAGACCCGACGGGCCGGAGAAGACAGTGCCTGGTGTGCAGCCTCCCCCTCCAAgtagcgaaaaaaaaaaaaaaacgatgggATGCTGAGACTGAAGCATCTAGCTGCCCCCTGTCGTTTCTTGATGTTCGTAATTGTTTCACAATGCAATCGAGAGTGTCACCATTGCCTGGATCCCTCAGGTACGAATGTGTGCTTGTAGCTGGACTTCATAGACTTAAGAGAATTTATGAAATTTTATTAGATTGAAGGGAGGATTGAGGATTAAGGATTAAGGACTGGGGATTGCAGAAACTTGGACCTACCTCTGGGATCTTCACAGAGTATCACAGAGCAATTATTATTATCGTTACTAATATTACTATGGGCTCATACTGCAGAGCTCAGTCTGGGCCTATCCATGTGTGTGGAGCATTACAAGAGGAAAAGACTCTTATTATTGGTTTATAAGCTCATTTAactcatatactgtatgtcttgGATACTCCTCCCTGGGACATGGCCAAACAAGACACTAATATGTTGGCGTTTCATATATTGGTGACTGTATGTTCTTCTTTTTCCCCccttgttattgttttttttatttttataaagccTTCCTGCTCTGCTGTTTCCCAGTTCAAAGTTTAAGGTTGAATAACCAGCACTGTGAAGAGttctaatactactactaatagcCATCTGCAGGAACAACCGCAATATGATCTATGAAAATGATTTTGTGGGTATAAGGTAATGAGTCCAGACTATACTTTATcatgtattaatgtttatttacccTGCATTGTGTTAAACATTGGAAAATGAGATGCAAAACTGATGTATTAATCAGCATTAATCAGCCAACGACTGAGGCCTATTTTCATGATtatgctttataaataattggttgttcagatcaatttcagttaaatacgtcatatagcagacaaacactgatatttgagaagtgaaatgaagttttcAGGATTCACAGAAAGTTGAGGAtcgcatggattccagtcaatatcagcagattcttgagaacaatgttgaagaatcagtgaaaaagttgaa

Function

symbol description
slc1a7a Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cerebellum; optic tectum; and telencephalon. Orthologous to human SLC1A7 (solute carrier family 1 member 7).
slc1a7 Predicted to enable anion transmembrane transporter activity. Involved in neurotransmitter reuptake. Predicted to be integral component of postsynaptic membrane. Predicted to be active in glutamatergic synapse. Predicted to be integral component of presynaptic membrane.

NR:

description
PREDICTED: excitatory amino acid transporter 5 isoform X1

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677819.1 True 2793 mRNA 0.48 11 2943136 2978445

Neighbor

gene id symbol gene type direction distance location
LOC111194192 NA coding upstream 21018 2920719 ~ 2922118 (+)
LOC103044744 NA coding upstream 179792 2747818 ~ 2763344 (+)
LOC103044144 LOC108430743 coding upstream 231420 2689286 ~ 2711716 (+)
LOC103044323 LOC108430700 coding upstream 349445 2589517 ~ 2593691 (+)
LOC111194265 NA coding upstream 379089 2562135 ~ 2564047 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding downstream 39135 3017580 ~ 3025513 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding downstream 59974 3038419 ~ 3049776 (+)
LOC103024237 NA coding downstream 85482 3063927 ~ 3069951 (+)
LOC103045957 LOC103045957,LOC108430690 coding downstream 127001 3105446 ~ 3108504 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding downstream 149300 3127745 ~ 3142947 (+)
G138080 NA non-coding upstream 43605 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 47726 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 79848 2862962 ~ 2863288 (+)
G138073 NA non-coding upstream 94024 2847557 ~ 2849112 (+)
G138058 lrp8 non-coding upstream 174212 2765320 ~ 2768924 (+)
G138092 NA non-coding downstream 18109 2996554 ~ 2997077 (+)
G138123 NA non-coding downstream 131957 3110402 ~ 3114615 (+)
G138524 gipc2,LOC108430720 non-coding downstream 178311 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 278456 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 514251 3492696 ~ 3494363 (+)
LOC103045052 cfap57,LOC106594647 other upstream 7007 2900475 ~ 2936129 (+)
G137929 NA other upstream 918750 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1091823 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1443180 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1903166 1037861 ~ 1039970 (+)
LOC103024858 NA other downstream 103611 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 136975 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 823408 3801853 ~ 3839372 (+)
G138701 NA other downstream 854810 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 1117552 4095997 ~ 4102241 (+)

Expression


Co-expression Network