LOC111192560


Basic Information

Item Value
gene id LOC111192560
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2792534 ~ 2793815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53999
CTACACACTAAAAACTGCTGGGTTATTTTAACTACTCATCTGCTGGGTTATGAAATGTCTAACCCATTATGAGTTATTTTTATGGGAACTGGGTTATTTTTGGGGGGATTTGGGTTGTTTTTGTGCAACTCATGTGCTGGGTCAAAATTTCGCAAAGTTCTTCAACCCAACATGCATCAGTTGACCCAGCAGCTGGGTTGTTTGTGCTTCGACCGTCATCACGTTTACAGGACGTGCTCCTCCTCCACCATTTCGCGCCCAGACAGGCTCCATGCTCCTTCAGCAGCTCGCAGGTGCTCGAGAGAGACTGATCATCTTTGtgCCTGGAACAAATATGGTGGAGCACCTCCATGAGGCCATGGCATCCAGACCTTACCCATGTCCTGACACCGGGAAATGACAATCCTTGCTGGACAGGCTTTGGAattttaatcacaata
>XR_002650014.1
ACTAAAAACTGCTGGGTTATTTTAACTACTCATCTGCTGGGTTATGAAATGTCTAACCCATTATGAGTTATTTTTATGGGAACTGGGTTATTTTTGGGGGGATTTGGGTTGTTTTTGTGCAACTCATGTGCTGGGTCAAAATTTCGCAAAGTTCTTCAACCCAACATGCATCAGTTGACCCAGCAGCTGGGTTGTTTGTGCTTCGACCGTCATCACGTTTACAGGACGTGCTCCTCCTCCACCATTTCGCGCCCAGACAGGCTCCATGCTCCTTCAGCAGCTCGCAGGTGCTCGAGAGAGACTGATCATCTTTGtgCCTGGAACAAATATGGTGGAGCACCTCCATGAGGCCATGGCATCCAGACCTTACCCATGTCCTGACACCGGGAAATGACAATCCTTGCTGGACAGGCTTTGGAattttaatcacaataatattttatttataattaatattaattattttccataattgttacattttacattgttgGCATTCAGTTATAATAAATTTCAAGGCAGTGCCTtgtaaaaatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53999 False 440 lncRNA 0.47 2 2792534 2793711
XR_002650014.1 True 538 lncRNA 0.42 2 2792540 2793815

Neighbor

gene id symbol gene type direction distance location
LOC103032316 LOC108412978 coding upstream 386146 2392115 ~ 2406388 (+)
LOC103031990 NA coding upstream 404446 2382053 ~ 2388088 (+)
LOC111192498 lrp4 coding upstream 556776 2118643 ~ 2235758 (+)
mapk8ip1 mapk8ip1 coding upstream 844112 1882803 ~ 1948422 (+)
slc35c1 slc35c1 coding upstream 920604 1865392 ~ 1871930 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 7203 2801018 ~ 2861383 (+)
zfand6 NA coding downstream 192550 2986365 ~ 3006325 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 214519 3008334 ~ 3042100 (+)
arnt2 arnt2 coding downstream 328777 3122592 ~ 3277613 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding downstream 635667 3429482 ~ 3645688 (+)
G39965 NA non-coding upstream 293243 2498869 ~ 2499291 (+)
G39943 NA non-coding upstream 367429 2419150 ~ 2425105 (+)
G39952 spoplb,LOC108412981,LOC103032629,LOC108270802,LOC107715774,LOC107718234,LOC107573035,LOC107551807 non-coding upstream 373478 2414772 ~ 2419056 (+)
G39946 NA non-coding upstream 400972 2389916 ~ 2391562 (+)
G39945 NA non-coding upstream 401895 2389038 ~ 2390639 (+)
G40014 NA non-coding downstream 13335 2807150 ~ 2810533 (+)
G40018 NA non-coding downstream 38890 2832705 ~ 2835026 (+)
G40030 NA non-coding downstream 166043 2959858 ~ 3003170 (+)
G40035 NA non-coding downstream 248589 3042404 ~ 3042631 (+)
G40095 NA non-coding downstream 475440 3269255 ~ 3270205 (+)
muc2 LOC108439647 other upstream 997602 1761227 ~ 1794932 (+)
polr2l NA other upstream 1365417 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 1378735 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 1524149 1265857 ~ 1268385 (+)
G39626 NA other upstream 1572048 1219806 ~ 1220486 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 588827 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 867860 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1043692 3837507 ~ 3856474 (+)
G40318 NA other downstream 1340695 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 1710582 4504397 ~ 4515611 (+)

Expression


Co-expression Network