G40186


Basic Information

Item Value
gene id G40186
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3654800 ~ 3655382 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54214
CAATTTATCTAAATAAATGgtcaattacatttttatttaatggaaaaTACTGCTTTTTAAAAGAACATAGTGGACCTAAGAAGACAAATTGGCAATTAGTTGTGGACAAAAACTGTAAGTACCTTTCAGAACTGAAGTAAAGCACTCGCGTTGCAGCACCCAGGTATCAGTGGCTCATGTTACTCACAAAATGAGACCCTAAACTTCTGATCATTCGGTCACACTTGTGAAAAACCTGGCTGGACGCTTTCCTCTCCCTGTAGTCTTTGAATAGGGcgtctgcctgtctctctccagctgctgctgcagtaaGTTCAGTACAGTCGGGCGTATCAGAGCTCCTGTTTGCTTTTGTTCGCTCGATTGGCCGCGTTCTTGTCCTTTTTCTTCTTGGTGTCGTTTTGTTCTTTCCCCTTGCTGTCCTTCTTGCCTGCTTTGCCAGGAAACACCTGTCCCTCCACAGTGACGTCCTCACAGCGCTCCTGGTTGATCAGGAAATCTTTAATCTCCCACGCGTAGCTGCCATCCCGCAGCATGAAGATGACGCGGTTGGAGCCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54214 True 560 lncRNA 0.46 2 3654800 3655382

Neighbor

gene id symbol gene type direction distance location
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 9112 3429482 ~ 3645688 (+)
arnt2 arnt2 coding upstream 377187 3122592 ~ 3277613 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding upstream 612700 3008334 ~ 3042100 (+)
zfand6 NA coding upstream 648475 2986365 ~ 3006325 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding upstream 793417 2801018 ~ 2861383 (+)
il16 il16 coding downstream 35336 3690718 ~ 3750084 (+)
LOC103021590 NA coding downstream 475240 4130622 ~ 4394295 (+)
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding downstream 779170 4434552 ~ 4490598 (+)
LOC103028701 adamtsl3,LOC107736989,LOC107685222,LOC107662271,LOC107591308 coding downstream 879852 4535234 ~ 4744552 (+)
efl1 efl1 coding downstream 1106811 4762193 ~ 4933029 (+)
G40112 NA non-coding upstream 167627 3399516 ~ 3487173 (+)
G40127 NA non-coding upstream 214188 3439890 ~ 3440612 (+)
G40113 NA non-coding upstream 227313 3383312 ~ 3427487 (+)
G40093 NA non-coding upstream 376503 3277679 ~ 3278297 (+)
G40095 NA non-coding upstream 384595 3269255 ~ 3270205 (+)
G40187 mesdc2,LOC106562689,LOC107553745 non-coding downstream 328 3655710 ~ 3657053 (+)
G40194 stard5 non-coding downstream 104779 3760161 ~ 3763427 (+)
G40274 NA non-coding downstream 220041 3875423 ~ 3875630 (+)
G40275 NA non-coding downstream 236250 3891632 ~ 3891893 (+)
G40287 NA non-coding downstream 245674 3901056 ~ 3933592 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other upstream 252862 3382642 ~ 3401938 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 843304 2597692 ~ 2811496 (+)
muc2 LOC108439647 other upstream 1859868 1761227 ~ 1794932 (+)
polr2l NA other upstream 2227683 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 2241001 1410430 ~ 1413799 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 6293 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 182125 3837507 ~ 3856474 (+)
G40318 NA other downstream 479128 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 849015 4504397 ~ 4515611 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other downstream 1650305 5305687 ~ 5312344 (+)

Expression


Co-expression Network