commd2 (commd2)


Basic Information

Item Value
gene id commd2
gene name commd2
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 281585 ~ 291022 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669464.1
TATCTGGCCGGATGGGTTTTGCTGGGAGTTGCAGTGATCATGTGACTCGCCCGCTGTAAACAGGCGGTTTTCTAAAGCaggatttattatatttatatattaaagcaTCAGCTTGTGCTGttatataactatatttatagtTGGGTATCAGACAGACTGCAGTATGTTGCTGGTTTTATCTGACGAGCATAAGGAACATCTGGGCTTTTTGCCTAAAGTGGACCCGGCGGTGGTTGGGGAGTTTGGAAGGATTGCTGTGGAGTTTTTAAAGAAGGGTTCAAATCCTAAAATCTACGAAGGAGCAGCAAGAAAGCTAAATGTGCCCTCAGAGACGGTTCAGCATGGAGTTGAAGGTTTGATGTATCTTCTCACTGAAAGTTCAAAGCTTATGatcTCTGAAATCGATTTCCAGGACTCTGTATTGGTATTGGGATTTTCTGAGGAGCTTAATAAACTCCTGCTACAACTGTATCTGGAAAACAGGAAAGAGGTTCGTCAGATTCTGAGTGAGCTCGCGCCCTCACTGCCTCACTATCGCAACCTTGAGTGGAGGTTTGACGTACAGctGGGGAGCAGAGCTCTTAGACAGCATGTGAAACCTGCAATTTGCCTAAAGCTCCATCTGGAGAGTGGAGGAACACAGACGGCCCGTGTTCTGCAGACAGACCCGGCCACACTGCTGCATCTCATCCAGGAGCTGGAGTGTGCACTCGCTGAAGTCAAAAGCAACCACTGCCGCAGAATCCTCCGCAATATTAAATAGTGCAGTGCAGTGGCACTAAAGACAGTGGCCACTAAATGGTGCAGAATGAGGCAATATTCCCGAGTTAAGGTTCTCAGCTACCTCTGCACTGATTTAACTGGTCATGTTTgctattaaatatgtttataatctgattactgcagttatctgattattcaagTAGTCAGTCATGTTAACAGCATACTCCAATTTCCTTGTCTAAATacctgatttaaaaaatctgatcaaGGGAGCTGGACTTTAGctcaataatcagatttttcagAGCAAATATACTGTTAATGGGAATATATATACTGGGATTTCTCAGTTTGTGCATAAGTGAAACCAGATCATGATCAAAAATTAGCAAGCAGCATTTAACCCAGCACCCACAAGAGTTCCAAAGCAGATATCAGATTATTGCCCAAATCAGTCTCTGATTATTCAAATTCATGTAAAATCATTGGTCAGATTAGTCAAAATCTGATGTTCTTCAGTAACTGGATTAGGAAGTGAATTTAAATGCACTTACTGATATTTGTACTGAGATGTTTTGGTGAAGCCCAGCCCTAAAAATGTTATATCATTTGgctaaaattgaaaaaataaaaacaaaatgtgtgaTGTAGAGGTACTTGGTGAAACTCGGGAGCACTTGGTAATATTTACTCTATAGATTGGCAACTACTTAACAAATTcatgcagaattttttttttttttatctaagaTAAACGTTCGGAAATTGGGTTCATCAGTAGATTTAGTTCCCTTTAGGAACACACAAACCTTGAAAATGTAAGAGAGTAATGAGCCTTAAGTCTTAAAACATAAgccttatatttacattttacgtAATTAGATTGCAGTTATTTGTTCTGTGTATGAttttgtcattgttttttttttgtttttttttcagtgaggattaatttttggtaaatgttttattattttgggaCCAGTCCTGTAATGGgcctaatctaatctaatctgacCATCTAAAATGAAGAAATGATAAATGTTTGTTCTTTCATGCATACTGTTTTCATCTGCACTGTATTTAGTGTTTACTGCATTAACAACAATGTGCtgtattatttcttattaattgtattttagaaataaaataatgttttattgta
>XR_002649913.1
TATCTGGCCGGATGGGTTTTGCTGGGAGTTGCAGTGATCATGTGACTCGCCCGCTGTAAACAGGCGGTTTTCTAAAGCaggatttattatatttatatattaaagcaTCAGCTTGTGCTGttatataactatatttatagtTGGGTATCAGACAGACTGCAGTATGTTGCTGGTTTTATCTGACGAGCATAAGGAACATCTGGGCTTTTTGCCTAAAGTGGACCCGGCGGTGGTTGGGGAGTTTGGAAGGATTGCTGTGGAGTTTTTAAAGAAGGGTTCAAATCCTAAAATCTACGAAGGAGCAGCAAGAAAGCTAAATGTGCCCTCAGAGACGGTTCAGCATGGAGTTGAAGGTTTGATGTATCTTCTCACTGAAAGTTCAAAGCTTATGatcTCTGAAATCGATTTCCAGGACTCTGTATTGGTATTGGGATTTTCTGAGGAGCTTAATAAACTCCTGCTACAACTGTATCTGGAAAACAGGAAAGAGGTTCGTCAGATTCTGAGTGAGCTCGCGCCCTCACTGCCTCACTATCGCAACCTTGAGTGGAGGTTTGACGTACAGctGGGGAGCAGAGCTCTTAGACAGCATGTGAAACCTGCAATTTGCCTAAAGCTCCATCTGGAGAGTGGAGGAACACAGACGGCCCGTGTTCTGCAGACAGACCCGGCCACACTGCTGCATCTCATCCAGGAGCTGGAGTGTGCACTCGCTGAAGTCAAAAGCAACCACTGCCGCAGAATCCTCCGCAATATTAAATAGTGCAGTGCAGTGGCACTAAAGACAGTGGCCACTAAATGGTGCAGAATGAGGCAATATTCCCGAGTTAAGGTTCTCAGCTACCTCTGCACTGATTTAACTGGTCATGTTTgctattaaatatgtttataatctgattactgcagttatctgattattcaagTAGTCAGTCATGTTAACAGCATACTCCAATTTCCTTGTCTAAATacctgatttaaaaaatctgatcaaGGGAGCTGGACTTTAGctcaataatcagatttttcagAGCAAATATACTGTTAATGGGAATATATATACTGGGATTTCTCAGTTTGTGCATAAGTGAACCCAGCACCCACAAGAGTTCCAAAGCAGATATCAGATTATTGCCCAAATCAGTCTCTGATTATTCAAATTCATGTAAAATCATTGGTCAGATTAGTCAAAATCTGATGTTCTTCAGTAACTGGATTAGGAAGTGAATTTAAATGCACTTACTGATATTTGTACTGAGATGTTTTGGTGAAGCCCAGCCCTAAAAATGTTATATCATTTGgctaaaattgaaaaaataaaaacaaaatgtgtgaTGTAGAGGTACTTGGTGAAACTCGGGAGCACTTGGTAATATTTACTCTATAGATTGGCAACTACTTAACAAATTcatgcagaattttttttttttttatctaagaTAAACGTTCGGAAATTGGGTTCATCAGTAGATTTAGTTCCCTTTAGGAACACACAAACCTTGAAAATGTAAGAGAGTAATGAGCCTTAAGTCTTAAAACATAAgccttatatttacattttacgtAATTAGATTGCAGTTATTTGTTCTGTGTATGAttttgtcattgttttttttttgtttttttttcagtgaggattaatttttggtaaatgttttattattttgggaCCAGTCCTGTAATGGgcctaatctaatctaatctgacCATCTAAAATGAAGAAATGATAAATGTTTGTTCTTTCATGCATACTGTTTTCATCTGCACTGTATTTAGTGTTTACTGCATTAACAACAATGTGCtgtattatttcttattaattgtattttagaaataaaataatgttttattgta

Function

symbol description
commd2 Orthologous to human COMMD2 (COMM domain containing 2).

NR:

description
COMM domain-containing protein 2 isoform X2

GO: NA

KEGG:

id description
K22558 COMMD2; COMM domain containing 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669464.1 True 1888 mRNA 0.38 5 281585 291022
XR_002649913.1 False 1851 misc_RNA 0.38 6 281585 291022

Neighbor

gene id symbol gene type direction distance location
LOC103034506 kcnh1b,LOC108411957,LOC108270513,LOC107689936,LOC107753489,LOC106564801,LOC105026838 coding upstream 42589 159102 ~ 238996 (+)
LOC103033866 mark1,LOC108271264,LOC108411950 coding upstream 201555 32499 ~ 80030 (+)
ptk7 ptk7,LOC108411955,LOC107698238 coding upstream 257714 506 ~ 23871 (+)
wwtr1 wwtr1 coding downstream 6245 297267 ~ 380545 (+)
LOC103032290 LOC108439433,LOC108271171 coding downstream 126346 417368 ~ 447315 (+)
LOC103032607 LOC108439442 coding downstream 170458 461480 ~ 471204 (+)
cp cp,LOC100533122 coding downstream 188250 479272 ~ 533627 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding downstream 327135 618157 ~ 637895 (+)
LOC111192488 NA non-coding upstream 26144 248773 ~ 255441 (+)
G39331 NA non-coding upstream 53328 220144 ~ 228257 (+)
G39327 NA non-coding upstream 98745 174825 ~ 182840 (+)
G39322 NA non-coding upstream 127297 153892 ~ 154288 (+)
G39284 NA non-coding upstream 237367 43855 ~ 44218 (+)
G39346 NA non-coding downstream 3677 294699 ~ 295077 (+)
G39347 NA non-coding downstream 4147 295169 ~ 295569 (+)
G39352 NA non-coding downstream 78121 369143 ~ 369781 (+)
G39349 NA non-coding downstream 120113 411135 ~ 412188 (+)
G39372 NA non-coding downstream 246083 537105 ~ 538332 (+)
plekho2 NA other downstream 631735 922757 ~ 963284 (+)
pdcd7 NA other downstream 747551 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 915765 1206787 ~ 1209096 (+)
G39626 NA other downstream 928784 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 974835 1265857 ~ 1268385 (+)

Expression


Co-expression Network