G77533


Basic Information

Item Value
gene id G77533
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2293289 ~ 2317480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104559
ataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacataactccaagtgtgattaaaaatcagggttattccaccaaatattgatttttgagctTAACCTTAATCTACTCTTAAAattaaatgacgatatttttatgtggaattcgggataaatgttttgtttagtttatagaataaaaaaaaaaatatatatatatatataatgttttttcattttacttaaacatatacttataaatagatttttttttctgagctgtataTCTCCAGAAAAAAGGCAAGTAATAGCCTTTCAATGGGCATGCTGTCATCAACTATAAAACTTGAAACTTGAAACCTGATTGGATGGGTTACTGGATGGGTTAAATCATTGTAATCAttgtaaacaataaaataaaataaaaaagaatatgaACATAAGAGTCCataaaactggggtgttggtcataaacatacacacacacacacacacacacactcaaaaacacTCATTCATTCTCTCAACATGAAAGACAGTCCAtttctgtttatacacacacatatatatttatatttatatttatatatatcgtCCTGTGCATCCTCCTCCCTCGGTTCTCCCACAGTTCCTCCACAGTGGGACCTCAGACCCAGCAGAAAGAAGTGGAGCTCCTGttgcttttcttcatttttttatgagAGGTTTCTTCCTTTCCAGATTATAGTCCACAGCAGATCTGAGCTTCAGCTCTGCAATTACAGACAATAACgcttccttttctctttttttggtcCGCTATGACGGGAGGATGAACCTGACCAGTCGAGAAGTTCAGAAGTCTTAATGTTTCTCGCTCGTTTCAGGCAGAACTCCACGCATGTCCGTGCTCTACCTGCCACTGGTGCAGGGTTCGGCTGTCCCCGCTGTCCAGGTCACGTGACTCCATCTCATCCAATTGGTCCCATCataggaaataataaaaataaaaaaatctcaaaaaggCTTCGTCCCAGAAAATATGTAATGCACTTATAAATAGGTCGACGTCAAAAGATGATTCACGGCACATTCTTCGGGGAACTCAAACTATGATCCCGTTATAtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104559 True 1177 lncRNA 0.37 2 2293289 2317480

Neighbor

gene id symbol gene type direction distance location
dnajc17 dnajc17 coding upstream 147013 2087613 ~ 2146276 (+)
LOC107197725 LOC108430641,LOC108269631 coding upstream 438411 1836789 ~ 1854878 (+)
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding upstream 462194 1805947 ~ 1831095 (+)
spint1 NA coding upstream 541181 1734621 ~ 1752108 (+)
ankrd63 NA coding upstream 645597 1645068 ~ 1647692 (+)
LOC103026471 LOC100304858 coding downstream 147830 2465310 ~ 2468562 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding downstream 153918 2471398 ~ 2474791 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding downstream 443190 2760670 ~ 2864439 (+)
eif2ak4 eif2ak4,LOC107673787 coding downstream 591129 2908609 ~ 2957430 (+)
tecpr2 tecpr2,LOC107758275 coding downstream 944311 3261791 ~ 3296653 (+)
G77534 NA non-coding upstream 3281 2197010 ~ 2290008 (+)
G77532 NA non-coding upstream 102625 2190322 ~ 2190664 (+)
G77531 NA non-coding upstream 107337 2184869 ~ 2185952 (+)
LOC103031311 inf2,LOC107678755 non-coding upstream 226435 2061113 ~ 2066854 (+)
G77510 NA non-coding upstream 262673 2026690 ~ 2030616 (+)
G77559 thbs1,LOC107668245,LOC107756566,LOC102310807,LOC101487021,LOC102776654 non-coding downstream 2735 2320215 ~ 2321005 (+)
G77566 acp7 non-coding downstream 82519 2399999 ~ 2452445 (+)
G77569 NA non-coding downstream 94047 2411527 ~ 2422946 (+)
G77575 NA non-coding downstream 133947 2451427 ~ 2477003 (+)
G77711 NA non-coding downstream 384719 2702199 ~ 2713270 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 283871 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 584992 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 596308 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 730109 1528970 ~ 1563180 (+)
G77410 NA other upstream 808239 1484670 ~ 1485050 (+)
LOC103031026 NA other downstream 140965 2458445 ~ 2464321 (+)
G77722 NA other downstream 582654 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 1004605 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 1448300 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 1972027 4289507 ~ 4298184 (+)

Expression


Co-expression Network