G77804


Basic Information

Item Value
gene id G77804
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3260466 ~ 3300671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104928
aaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatacacacatatatatatacacatatatacacatatattcaGGATCAGATTGCTTTGCCAAGACTAATTGCATCATTACTCTGAGAAACCTGCAAAATATGGGTACTGGTTTATATTAGAGGGTATTTTCAGGGCTTTTATTAAAGGGATACAGACTGAAGTCTGACCTATAGGGAAAGTAAGGGAAGTCCCTAATAACACTAATACAAGTTAAATACTTGACGTGAGTGAAATCATGGTAGTCTTTGGCACATATCTGCACTTGTGTCAGATAGAGAgcatggtctcttttttttttttttttttaccccatgTTCACTAAGGTAGCGTTATGTACTGGAGTTTGTACGATAATAGAAAATTTAGATATTGAGAAATTCATGAGTAGGATCCAAGTCTTAACTTGTGATAATAGAGtcgattttattattaatcattacaaaaTCAGTAACAATATATCAGCAGCTATTAGAGAACATGCTTAGGAGAAACAGTTACAGCACATGAGGCCTTGTTCAGGTCCTGGAAATCGGCATTCTGATTTCAGCGTATTGAAGGTCTACAGCCTGCAGAGCAACCGGAGACGTTATCATGGTGCTCGATTAACCGCCTAGCTCGATAGGTTTACTACAAACTAAAACAGCATATAGGACAAACTATAACACCAATCAGCTAAATACAGCATTTGCTGTGATACAGAAGCAAAACGAGAAACAGCATCAACTTTGGAATAAGCTAAAATGAAAGCTCTATTAATACAGGAACAAATTGCTGGGGTGTCTGGTTATTTGTACCAACTTTGATTTGTCGGTATACATTTATATAGTATTAATACCTGTTGAGCCTTTTCACAATTtatcacattacaaccacaaatttaaatgtattttatcaagTGTTATTGTGAAGTAATAAGTGATGGACCAACGCAAAgaagcaccttcttccacatttGCTGTATTCTGTACAGTTTGCCTGTAGCATActacaaacagcacttcttgtgtctttctttcaacaatggttttgTTCTTGCTACTTCCCACTTTTCCATAAAGTGTATGAATTATAGTTGCCCTGTGGACTGATTCTTCCACATGAGCTGtgaatttctgcagctcctccagagtgaccatgggcctcttggctgcttctctgaccagtgctctccttgctcgatctgtcagttggGTGAACCATGTCTTAGTAGGTTTGCAGGTATAGATTACTTTTTCCAtctttggatgatggattgaacaatgctacttgggatgctcaaagcttgggatatgtttttcataacctaatgctttaaaattcttctccacaactttatctctgacctgtctggtgagttccttggtctcttcatgatgctgtttgttcgcTAGTTCGCaacacactaaaaataaattacacacagctggattctATTAAAGAATTAATTGTTTTCTGAAGGGAAATTGATTGAACTCGATTTTATTTATGGGTTTCGGAATAAAGGGGTGCTGAATAAGTtggcacatcacacttttcagatttttatttgattaaatcaCTTCTCACTGATGTGCtaatttgtgttggtctattagttaaaataaatacaaaaatatatatttaagtttgtggttgtaaggtgacaaaatgtgaaagttTAATGggcatgaatacttttgcaagccactgtttCCATAGCTTGATATATAgaacatgtacagctctggggaaaaaataagagaccacttaacaaTGAGAAGTTTCTATGATTGAAAATcttttgaatataatcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagacacattaattatttaaggtctaaaagctctgcatcttttttgttgtttcagccatttctcatgttctgcaaataaatgctctaaataaatatatttttatttggaatttgggagaaatgttgtctgtagtttttagaataaaacaacaatgttcattttacttaaacatatatctataaatagcaaaatcagagaaactgattcagaaactgaagtgttctcttaattttttttccagagctgtatattgagcAGTAGATGCATATGCAAaacctaaaaaacaaaattggACCCCTGTGACTACTTCTCTGTATCACCCAAGCTTTTATAGCTTACTTAAGCTTTTGTAGCTCTTCCCAAATTTGAGCGTAGGACATTCTGTCGTAGCTTTAGTGCACAGCCATACACAATTTAGCATTTTGATGTctgcatataaataaatttgtgtttttattttcccattaatacaaaaatattaaaaaccgTTTCGAAGAGTTTTTAGAGCTTTCAGACGATTCCACACTTGAAAGCATCTTCAAAAACTCTGTGATCATGTGAACGGAAGGCcgaaaagaagagaaaacacAAAGTTCCTTAAAGTAGAGAGGCTTGTGCATTCTTAGCTCTTCTGTTCAGTACTAAACATTCCGTTTATttcattcttcttctttttttcagtagaCTGTTGATTAGTGCtgtttaaagagttttaaatACTCCGACACACATTAAAGCTGCTTTGTTGATAGAAGCTATCATCGTCCGTTATCAGTGAACTGTATTTTATTGCTGGATGCGCTGGATTTTCATGTAACTCGATATAGAGAATGCATCTTGCTAGTTATTTAATGACTAAGTGTATCATAGCTAATTTATTATAAGGTCAGATTAAGGGTCTGACAACAGTTTCTTCCGAGCGTCTGACTTTGTGACTTTTGTGTCTGTGAATTTCCCCCTTTACGTTTCTTACTACGGACACCTCAGAAATGTCTTTATGCAATTAACCCACGGGAATTATCAGACCGATGTGTTGATAGTTTcttttatttgctgttttttttttccttttacatgTGAAACTTTGCCTTTAAGTCCGGGAGCTGCCCTGCTCCTCTTCTCCTCTGACCACAATACTGTTGTTGGTGAgagtaaaacacagtaaaactcgCAGCAGAGCAGTGTGTGACCTGTGTGGTTTGAAGGAATGTTATTAACCATGCTTTAACCTCACTGTCTTCATGCATAATCTGTACAAACGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104928 True 3241 lncRNA 0.35 2 3260466 3300671

Neighbor

gene id symbol gene type direction distance location
eif2ak4 eif2ak4,LOC107673787 coding upstream 303036 2908609 ~ 2957430 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding upstream 396027 2760670 ~ 2864439 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding upstream 785675 2471398 ~ 2474791 (+)
LOC103026471 LOC100304858 coding upstream 791904 2465310 ~ 2468562 (+)
fsip1 NA coding upstream 947804 2247051 ~ 2312662 (+)
rcor1 rcor1,LOC107719500,LOC107590914,LOC107733187 coding downstream 9147 3309818 ~ 3324750 (+)
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding downstream 65071 3365742 ~ 3393158 (+)
LOC103028182 sptbn5 coding downstream 95788 3396459 ~ 3475761 (+)
trnav-aac_2 NA coding downstream 115497 3416168 ~ 3416240 (+)
trnav-aac_3 NA coding downstream 116168 3416839 ~ 3416911 (+)
G77799 NA non-coding upstream 47601 3212557 ~ 3212865 (+)
G77792 NA non-coding upstream 54252 3197217 ~ 3206214 (+)
G77724 NA non-coding upstream 273756 2950074 ~ 2986710 (+)
G77727 NA non-coding upstream 293365 2964050 ~ 2967101 (+)
G77721 NA non-coding upstream 364832 2894872 ~ 2895634 (+)
G77817 NA non-coding downstream 93709 3394380 ~ 3394876 (+)
G77847 NA non-coding downstream 241581 3542252 ~ 3549615 (+)
G77961 hectd1,LOC107694830 non-coding downstream 616133 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 712079 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 731592 4032263 ~ 4032562 (+)
G77722 NA other upstream 282372 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 796145 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1251048 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1552169 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 1563485 1693356 ~ 1696981 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 21414 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 465109 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 988836 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2151444 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3556683 6857354 ~ 6872405 (+)

Expression


Co-expression Network