G77961 (hectd1,LOC107694830)


Basic Information

Item Value
gene id G77961
gene name hectd1,LOC107694830
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3916804 ~ 3921829 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105133
CTTTGcaaacattttaatgattattttggagCATACACATTTGAAAATATTTGTTTACTTCAAACTGCAACTtgagttaaataaatgtttataatatacAAAGAAAATACAATGAGAAGCATAGCTTGcttttttacctttctttttcttttctttttcttttttaaatgtgcctAGCACACAGaaccagtgtttttttctttttgtctctatagctttattgtaaaattaCACAAATGCACTCCGGGACGTTTATCCtttcagcagagagagagagatgaacaaTTGAAATATACAGCGTAAGGAAGGGGGGGAGgaggagaaataaaaagaaaacgtGGGCATGATCGCTGAAAGATTCAAGCCAAACAAAAAAAGGGGGAAGGGGGAGAGAAAATCCTAATAGTTCAAATAATGCAGGCACTAGTAAAACTTAAAACCTGGAAATACCCAAACACTCTACAGTTAGCTCTACACAAGCAGGTGATTGTGCCCCCCTCTCAGGGAAACCGGGGTCTGGGGTGCGTGAGATGACTGTGCTACGTGGGAGTCTGAAAGGAAAGCCTATGCTGAGTTTTACGTAGACGCTCTGAGCCGGGTACGAGAGTAAACGCGGGATACGAGGAGAGACTGCCCGCCCTCGGCTACCATCGGCTCGAGCCCTTAAAGCAGTGCAGAGCCCCGAGGAGAGGCCATGAGGAGTCTGTGGCAAGATGGGCAGGGGCACAGCCCTAAATCTGTTTCAGTAGCTAGTGAGCTGAACATGGGGTTCCTTTTGGTTACAGGCGTAAATGTGGGGGCTGTGTAGAGGAGGGGGAGATTTCATTGACGAGCAcagcttttgtatttttctttttttttttttttctgcaacaaaaacacaacaggctTCATCAGTCCAGGGAGTTGGTCAGTGGTGCAGGGAGAGCATGCTCAGTTGAGGTGGAAGCCCTTTTCCATAGTTGCGGCGAGAAGGCGCTCTCTCATGATCTCCTCGGAGGAATACTCCGGCAACTTCAGGTAGTGCACGCATGTGTTTACAGAGGGGTAGCTGGCATCTGTTGCATCCACcTGCGAACAATTGTGAGACGAGGGTGCAAGTTGGCGAGTCCACCAGGAGGCAGTGTTGAGCAACCAGTTGTGAACTGAAGGAAGGCTTTCCTCTCATCTGAGGACATTCCACACAGAACTCGCACAAAGCGGAGGAACCCAGGACTGAC
>TU105134
CTTTGcaaacattttaatgattattttggagCATACACATTTGAAAATATTTGTTTACTTCAAACTGCAACTtgagttaaataaatgtttataatatacAAAGAAAATACAATGAGAAGCATAGCTTGcttttttacctttctttttcttttctttttcttttttaaatgtgcctAGCACACAGaaccagtgtttttttctttttgtctctatagctttattgtaaaattaCACAAATGCACTCCGGGACGTTTATCCtttcagcagagagagagagatgaacaaTTGAAATATACAGCGTAAGGAAGGGGGGGAGgaggagaaataaaaagaaaacgtGGGCATGATCGCTGAAAGATTCAAGCCAAACAAAAAAAGGGGGAAGGGGGAGAGAAAATCCTAATAGTTCAAATAATGCAGGCACTAGTAAAACTTAAAACCTGGAAATACCCAAACACTCTACAGTTAGCTCTACACAAGCAGGTGATTGTGCCCCCCTCTCAGGGAAACCGGGGTCTGGGGTGCGTGAGATGACTGTGCTACGTGGGAGTCTGAAAGGAAAGCCTATGCTGAGTTTTACGTAGACGCTCTGAGCCGGGTACGAGAGTAAACGCGGGATACGAGGAGAGACTGCCCGCCCTCGGCTACCATCGGCTCGAGCCCTTAAAGCAGTGCAGAGCCCCGAGGAGAGGCCATGAGGAGTCTGTGGCAAGATGGGCAGGGGCACAGCCCTAAATCTGTTTCAGTAGCTAGTGAGCTGAACATGGGGTTCCTTTTGGTTACAGGCGTAAATGTGGGGGCTGTGTAGAGGAGGGGGAGATTTCATTGACGAGCAcagcttttgtatttttctttttttttttttttctgcaacaaaaacacaacaggctTCATCAGTCCAGGGAGTTGGTCAGTGGTGCAGGGAGAGCATGCTCAGTTGAGGTGGAAGCCCTTTTCCATAGTTGCGGCGAGAAGGCGCTCTCTCATGATCTCCTCGGAGGAATACTCCGGCAACTTCAGGTAGTGCACGCATGTGTTTACAGAGGGGTAGCTGGCATCTGTTGCATCCACcTGCGAACAATTGTGAGACGAGGGTGCAAGTTGGCGAGTCCACCAGGAGGCAGTGTTGAGCAACCAGTTGTGAACTGAAGGAAGGCTTTCCTCTCATCTGAGGACATTCCACACAGAACTCGCACAAAGCGGAGGAACCCAGGACTGACTGTCTCGAGTGTATCCCAGTTTGGGCTCAGTGTAGTTGACGATGTCCTCAGCCGTCCAGGACGGAGACTGGTTCCCACACAGGATCATCTGGACCTCTTTATGACTGAATGAGCTTAGTTTCTCCATAGGGAACACCCTGTTAAAGCCCTCTCTGAAGGCCTCCATTTGCTTCTGGATTCCAGTGTGCATACAGAAGTCAAACATCAACTCCACATACTCCTCTGCATTCTCCATGGTAACCATCTCGTCATCTCCATTGGGCTTAAGGTCTACTGCTGAAAAGCCATGTACTTTAGATGAGGGACAGAACTGGAAATTTaatCCCAGGTCTTCTACACTGAGTGGCGGGCCGGAGCCCATAGGGTTCTTCAGCATGAGATCTTGTAGCCGAGTGTTCTTTTCGTCCTCTGAAAGGCTCTTATTGCCCAGGATTTGCCTCCTCTTTACTGCCAGATCCTTCATCTCCTTCAAGAATCGTGCTCTGTGAGGGTTCACCAGTTCAAAGTCCTCCCACGTCAGGATGCCATGGTACCAGGCAGGGGGTTTGGGCTTCGGTGGGTCAAGAATAAATTCAGATTTTGAGTCCTCATCAAAGCTGCCCATTGAGTACGTGTCTTGACCCTCCTCAGTGGAGGCCTCCAGCTGGATCTCGGAGAAGCGGTGGTCAGAGTCCCCGTGGGTCTGGTACAGCAGCTTACTCATGTTGCTCTTAATGTCTCCCATACAAAGCAGCTTGAAGAAGGGCTGGGAAATGGGCAGGTCCACAAGCCTGTTGTCCTGGATGCACTTGGCCAGGAAGATGCCCAGGAAGAGGAACAGCTTGGTGATGCGCTCCAATTCGTCATTATCCTGTGGGAACGGTGCAGGGAAAAGGCCGCAGGAGCGCTGTACGTAATAGCCAGGGGGTTTCAGACCACCTCCTAGATCCACCTGAATGACAAACAAAAGCATACAATGA

Function

symbol description
hectd1 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in anatomical structure development and protein K63-linked ubiquitination. Predicted to act upstream of or within protein ubiquitination. Orthologous to human HECTD1 (HECT domain E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HECTD1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105133 False 1220 lncRNA 0.46 2 3916804 3918653
TU105134 True 2179 lncRNA 0.48 6 3916804 3921829

Neighbor

gene id symbol gene type direction distance location
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding upstream 1027 3907898 ~ 3915777 (+)
coch coch coding upstream 37486 3868553 ~ 3879318 (+)
LOC103022404 LOC108430680 coding upstream 58349 3853606 ~ 3858455 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding upstream 63680 3825628 ~ 3853124 (+)
foxg1 foxg1,foxg1a,LOC107590911 coding upstream 432142 3482138 ~ 3484662 (+)
LOC103044683 NA coding downstream 85686 4007515 ~ 4011258 (+)
klhdc1 klhdc1 coding downstream 376967 4298796 ~ 4308409 (+)
dnaaf2 NA coding downstream 388488 4310317 ~ 4313788 (+)
klhdc2 klhdc2 coding downstream 400725 4322554 ~ 4329505 (+)
mok mok coding downstream 432927 4354756 ~ 4364804 (+)
G77847 NA non-coding upstream 367189 3542252 ~ 3549615 (+)
G77817 NA non-coding upstream 521928 3394380 ~ 3394876 (+)
G77804 NA non-coding upstream 616133 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 619362 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 703939 3212557 ~ 3212865 (+)
G78053 NA non-coding downstream 90921 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 110434 4032263 ~ 4032562 (+)
G78057 NA non-coding downstream 114485 4036314 ~ 4036575 (+)
G78059 NA non-coding downstream 123608 4045437 ~ 4104875 (+)
G78060 NA non-coding downstream 159566 4081395 ~ 4114376 (+)
g2e3 g2e3 other upstream 91932 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 557060 3322085 ~ 3359744 (+)
G77722 NA other upstream 938710 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1452483 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1907386 1912532 ~ 2009418 (+)
G78111 pole2 other downstream 367678 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1530286 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2935525 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3672878 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3734478 7656307 ~ 7729001 (+)

Expression


Co-expression Network