G78053


Basic Information

Item Value
gene id G78053
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4012750 ~ 4013009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105259
gtctggaggaagagtggagagacacacagtccaaactgcttgaggtctagtgtgaagtttccaccaatcagtgaaggtttggagagacatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatgcttccctctgctgataacaacttttatagagatgtggatttcattttccagcaggacttggcacactgcccacac

Function

GO:

id name namespace
GO:0015849 organic acid transport biological_process
GO:0046942 carboxylic acid transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105259 True 260 lncRNA 0.44 1 4012750 4013009

Neighbor

gene id symbol gene type direction distance location
LOC103044683 NA coding upstream 1492 4007515 ~ 4011258 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding upstream 96973 3907898 ~ 3915777 (+)
coch coch coding upstream 133432 3868553 ~ 3879318 (+)
LOC103022404 LOC108430680 coding upstream 154295 3853606 ~ 3858455 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding upstream 159626 3825628 ~ 3853124 (+)
klhdc1 klhdc1 coding downstream 285787 4298796 ~ 4308409 (+)
dnaaf2 NA coding downstream 297308 4310317 ~ 4313788 (+)
klhdc2 klhdc2 coding downstream 309545 4322554 ~ 4329505 (+)
mok mok coding downstream 341747 4354756 ~ 4364804 (+)
LOC103042329 NA coding downstream 367298 4380307 ~ 4387505 (+)
G77961 hectd1,LOC107694830 non-coding upstream 90921 3916804 ~ 3921829 (+)
G77847 NA non-coding upstream 463135 3542252 ~ 3549615 (+)
G77817 NA non-coding upstream 617874 3394380 ~ 3394876 (+)
G77804 NA non-coding upstream 712079 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 715308 3220621 ~ 3297442 (+)
G78055 NA non-coding downstream 19254 4032263 ~ 4032562 (+)
G78057 NA non-coding downstream 23305 4036314 ~ 4036575 (+)
G78059 NA non-coding downstream 32428 4045437 ~ 4104875 (+)
G78060 NA non-coding downstream 68386 4081395 ~ 4114376 (+)
G78068 NA non-coding downstream 141734 4154743 ~ 4157865 (+)
g2e3 g2e3 other upstream 187878 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 653006 3322085 ~ 3359744 (+)
G77722 NA other upstream 1034656 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1548429 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 2003332 1912532 ~ 2009418 (+)
G78111 pole2 other downstream 276498 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1439106 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2844345 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3581698 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3643298 7656307 ~ 7729001 (+)

Expression


Co-expression Network