LOC103024862 (LOC108430185)


Basic Information

Item Value
gene id LOC103024862
gene name LOC108430185
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6857354 ~ 6872405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105776
GTCCGCTTCACCCTCAGAATCATCCTGCTTGCAccacatttatttacaaaaaagtgATTTGGAGTGTAGTCAGACCTTTCCCTTCATTATTTTTCCTTTACACTTGGAAATAAAGCTAGATAAAATTGATTCTTCATTCTGCAAAAACCAGGATGAAGTTTGAAAACCTGCTGGCCGAGGTTGGGGGATTTGGACCCTTTCAAATCGGGATCATTCTCATGCTGGTGATTCCACGGGTCAGCCTGCCTTTTCATTTCCTGCTGAATAACTTCATCGCCGCCATCCCAGACCACCACTGTGATTTCAGCTCTCTGGACACTTCTGGAGTTTTTGAAACTCTTTCTCAGGAGCAGAGACTGACTGTCAGCATTCCTCAACATGAAGATGGAAGCTTTTCTTCTTGTCACATGTTCTCAGAACCTCAATTCCACCTGCTAACCAACTCGTCAAACTCTACAGAGCTTCCTGTGGTTCAATGCCAAAATGGATGGGTGTATGACAACAGCACTTTTAAATCAACCTTGGCTAGTGagtGGAACCTGGTCTGTGATAAGAAGAGCATGAATAAAGCCACTGCCACCATCTTCTTCAGTGGTGTGATGGTTGGAGCTGCAATATTTGGCAGTCTGAGTGACAGATTTGGCAGGAAGCCCATGCTGATGGTGTCCTTTATCTCAGCCGCGTTCTTCTCTGTTGTCAGCGCCTTCTCCACCTCCTACATCATGTTTGCTGTTATGAGATTCTTCACAGGAATGGGAATCACCGGCATTAGTATTATCTCCATTGTCCTCTG
>TU105780
atcgtTTGGCGCTGGATTCCAGAGTCAGCAAGGTGGCTGATAGCCAATGGCAGATTGGAAGAGGCTCATTACTATCTCTCTAAGTGcgcctcagccaatcacagagaGAAAAGTCTGCAAAACATCAAGCCCCAGACCCTCGCCACTGTAATTGTCTCAGAAGGAGACAGGAAGTACACATATCTGGATTTACTGAGAACTCCTAAACTCAGGAAACTGGCTGTGGTGACCGGCATCACTTGGTTTGGCGTAGCATTCACCTACTACGGTATCAGTTTAAACGTGGATGGGTTCGGCCTAAACCTCTACCTGACCCAGTTCATCTATGGTACCATAGAGCTGCCGGCAAAGCTGCTGATCTACCTGAGTCTGCAGAAGCTGGGCCGCAGGTACAGTCAGGTGGGCACGCTGATCTTGACGGGGGTGTGTATCGCCATCACCATTATAATCCCGAAAGTGAACTGGCTTCCTCGTACAGCAGTAGCAGTGCTGGGGAAAGGCTTTTCCGAAGCCTCTTTTACGTCAGTGTTTCTTTACACTACTGAACTCTACCCTACAGTCATACGGCAGAACGGGCTGGGCTTTTGCTCTTGTCTGGCCCGTGTGGGCGTGTCTGTGGCACCGCTGGTGAGCCTCCTTCAAGAGACGTGGACCCCTCTGCCGCAGgtcctgttctgttctgtagCCATCCTAGCGGGCCTCCTCGCGCTGCTCCTCCCTGAGACCCACAACGTCCGCCTGCCAGAAACCATCGAGGACGTTGAGCAGACAAGgAAAAGATCCATCTGCATTCCAGATCATCTGAGAGAACTGCAAGAGGACGCTGCTCCCTTAGGATCAGAcgcaatgacaataaaataatgagaaaatctCTGAACTGAATGTAATATGTTATTGAAATTTCAACATTTTGTAATCATGTAACAGGACACTTAATACTAGCAGTAGTGATTTAAATCTCCGCTCACTGAATGTACTATTCTGAAGCGTTCTCTAAATGTGTAATTTCTTCTAAATAAACACTAATCTGTTTA
>XM_022672466.1
AACATTAGACAAAGGCTTGAATGAGTGACGAATAAGCAGACATAGAAGTAGACTGGTCCGCTTCACCCTCAGAATCATCCTGCTTGCAccacatttatttacaaaaaagtgATTTGGAGTGTAGTCAGACCTTTCCCTTCATTATTTTTCCTTTACACTTGGAAATAAAGCTAGATAAAATTGATTCTTCATTCTGCAAAAACCAGGATGAAGTTTGAAAACCTGCTGGCCGAGGTTGGGGGATTTGGACCCTTTCAAATCGGGATCATTCTCATGCTGGTGATTCCACGGGTCAGCCTGCCTTTTCATTTCCTGCTGAATAACTTCATCGCCGCCATCCCAGACCACCACTGTGATTTCAGCTCTCTGGACACTTCTGGAGTTTTTGAAACTCTTTCTCAGGAGCAGAGACTGACTGTCAGCATTCCTCAACATGAAGATGGAAGCTTTTCTTCTTGTCACATGTTCTCAGAACCTCAATTCCACCTGCTAACCAACTCGTCAAACTCTACAGAGCTTCCTGTGGTTCAATGCCAAAATGGATGGGTGTATGACAACAGCACTTTTAAATCAACCTTGGCTAGTGagtGGAACCTGGTCTGTGATAAGAAGAGCATGAATAAAGCCACTGCCACCATCTTCTTCAGTGGTGTGATGGTTGGAGCTGCAATATTTGGCAGTCTGAGTGACAGATTTGGCAGGAAGCCCATGCTGATGGTGTCCTTTATCTCAGCCGCGTTCTTCTCTGTTGTCAGCGCCTTCTCCACCTCCTACATCATGTTTGCTGTTATGAGATTCTTCACAGGAATGGGAATCACCGGCATTAGTATTATCTCCATTGTCCTCTGTGAGTGGATGATTgtTTGGCGCTGGATTCCAGAGTCAGCAAGGTGGCTGATAGCCAATGGCAGATTGGAAGAGGCTCATTACTATCTCTCTAAGTGcgcctcagccaatcacagagaGAAAAGTCTGCAAAACATCAAGCCCCAGACCCTCGCCACTGTAATTGTCTCAGAAGGAGACAGGAAGTACACATATCTGGATTTACTGAGAACTCCTAAACTCAGGAAACTGGCTGTGGTGACCGGCATCACTTGGTTTGGCGTAGCATTCACCTACTACGGTATCAGTTTAAACGTGGATGGGTTCGGCCTAAACCTCTACCTGACCCAGTTCATCTATGGTACCATAGAGCTGCCGGCAAAGCTGCTGATCTACCTGAGTCTGCAGAAGCTGGGCCGCAGGTACAGTCAGGTGGGCACGCTGATCTTGACGGGGGTGTGTATCGCCATCACCATTATAATCCCGAAAGTGAACTGGCTTCCTCGTACAGCAGTAGCAGTGCTGGGGAAAGGCTTTTCCGAAGCCTCTTTTACGTCAGTGTTTCTTTACACTACTGAACTCTACCCTACAGTCATACGGCAGAACGGGCTGGGCTTTTGCTCTTGTCTGGCCCGTGTGGGCGTGTCTGTGGCACCGCTGGTGAGCCTCCTTCAAGAGACGTGGACCCCTCTGCCGCAGgtcctgttctgttctgtagCCATCCTAGCGGGCCTCCTCGCGCTGCTCCTCCCTGAGACCCACAACGTCCGCCTGCCAGAAACCATCGAGGACGTTGAGCAGACAAGgAAAAGATCCATCTGCATTCCAGATCATCTGAGAGAACTGCAAGAGGACGCTGCTCCCTTAGGATCAGAcgcaatgacaataaaataatgagaaaatctCTGAACTGAATGTAATATGTTATTGAAATTTCAACATTTTGTAATCATGTAACAGGACACTTAATACTAGCAGTAGTGATTTAAATCTCCGCTCACTGAATGTACTATTCTGAAGCGTTCTCTAAATGTGTAATTTCTTCTAAATAAACACTAATCTGTTTA

Function

NR:

description
PREDICTED: solute carrier family 22 member 7-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105776 False 793 TUCP 0.45 3 6857409 6861157
TU105780 False 1034 lncRNA 0.49 7 6862977 6872405
XM_022672466.1 True 1892 mRNA 0.47 10 6857354 6872405

Neighbor

gene id symbol gene type direction distance location
LOC103028659 NA coding upstream 6902 6833585 ~ 6850452 (+)
LOC103028352 ttbk1b,LOC108430218,LOC107583645,LOC107670856,LOC107553314,LOC107689778 coding upstream 31290 6773726 ~ 6826064 (+)
mrps5 mrps5 coding upstream 174241 6627993 ~ 6683113 (+)
pacrg pacrg,LOC107583491,LOC107695182,LOC107697704,LOC107590953 coding upstream 1416620 5345136 ~ 5440734 (+)
ptafr NA coding upstream 1567588 5282014 ~ 5289766 (+)
LOC103025489 NA coding downstream 158 6872563 ~ 6884096 (+)
LOC103028981 NA coding downstream 13710 6886115 ~ 6894577 (+)
hhat hhat coding downstream 102510 6974915 ~ 7073508 (+)
LOC111193178 NA coding downstream 354085 7226490 ~ 7244752 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding downstream 382708 7255113 ~ 7277103 (+)
G78470 NA non-coding upstream 36792 6814777 ~ 6820562 (+)
G78471 ttbk1b,LOC107717064 non-coding upstream 42780 6812532 ~ 6814574 (+)
G78426 NA non-coding upstream 107044 6749685 ~ 6750310 (+)
G78425 NA non-coding upstream 108818 6747979 ~ 6748536 (+)
G78416 NA non-coding upstream 141166 6713456 ~ 6716188 (+)
G78521 NA non-coding downstream 27477 6899882 ~ 6906647 (+)
G78528 NA non-coding downstream 45211 6917616 ~ 6924022 (+)
G78531 NA non-coding downstream 54949 6927354 ~ 6928056 (+)
G78542 NA non-coding downstream 96461 6968866 ~ 6969179 (+)
LOC111193179 NA non-coding downstream 379727 7252132 ~ 7254917 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 1327299 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 2559170 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 3032482 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 3497610 3322085 ~ 3359744 (+)
G77722 NA other upstream 3879260 2900134 ~ 2978094 (+)
G78671 LOC107659230,LOC107583602 other downstream 722302 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 783902 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 1657449 8529854 ~ 8549968 (+)
G78818 NA other downstream 1663511 8535916 ~ 8537682 (+)
spata17 NA other downstream 2623044 9495449 ~ 9554725 (+)

Expression


Co-expression Network