foxg1 (foxg1,foxg1a,LOC107590911)


Basic Information

Item Value
gene id foxg1
gene name foxg1,foxg1a,LOC107590911
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3482138 ~ 3484662 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257917.3
GGTTGGCTGCAGCCCGTAAAGGTtgaactcattttttttctagctTTAGTGTCTGTGGCTCCGTAATTAATTGTAGCTAGCTGTCTCTTATCGACGCGTTTTTCAAGGAACATGAAATAGTTTGTTGGGccgtgtttgtgtgagtgtgtgtgtgtatgtgtgtgtgcgcgcgcggtGTTTCTGGGCTGATTTCCCCCCTTTCCCCCTGTCGAAAGGAGTTGCCGGCGTTTAGGAGATTTTGAGGTCCAACTGTGCAGCTGGTTGTTGCTGTTCTACCTTTTTTGCGTGTGATGTTGGATATGGGAGACCGGAAAGAAGTGAAGATGATTCCCAAATCGTCGTTCAGTATAAACAGTCTGGTTCCCGAAGCCGTCCTGAGCGATAACCACCACAGGGCTGCTGGAcccgaggaggaggagaaggtgcCCCTGTCCGGAGCGCAGGACTCCAAGTCGGAGAGCGCCTGTGCTAAAAGTGAGAGCACAGACTCGACGTGCGCGGACGAGAAGGAGAAGCAGGAAGAAAAGAAGGACTCGAAGGAGGGCGAAGGGGGCGGCAAAGACAGCGAGAAGAAGAACGGCAAGTACGAGAAACCGCCGTTCAGCTACAACGCGCTCATCATGATGGCCATCCGGCAGAGTCCGGAGAAGCGGCTCACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTTCCGTACTACCGAGAGAACAAGCAGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTCAACAAATGTTTCGTTAAAGTTCCTCGGCATTACGACGACCCGGGCAAGGGCAACTACTGGATGCTCGACCCGTCCAGCGACGACGTGTTCATCGGCGGGACGACAGGAAAGCTTCGCCGAAGGTCAACCACGTCCCGGGCCAAGCTGGCGTTCAAGCGGGGTGCGCGCCTCACGTCCACCGGCCTGACGTTCATGGACCGAGCCGGCTCTCTCTACTGGCCCATGTCTCCCTTCCTCTCCCTGCACCACCCAAGGGCGAGCAGCGCGCTCAGCTACAACGGCACGTCGTCCCCGTACCCCAGTCACCCCATGTCCTACAGCACCATGCTGACCCAGAACAGCCTGAGCAACAACCACTCGTTCCCGGCTTCCAACGGCCTGAGTGTGGACAGACTCGTAAACGGGGAGTTGCCGTACGCCACGCATCACCTCACGGCGGCCGCCTTGGCCGCCTCTGTACCTTGCGGGCTTTCCGTGCCCTGCTCTGGGACGTACTCACTCAATCCGTGCTCCGTGAACCTGCTGGCTGGACAGACCGGCTACTTCTTTCCACACGTCCCGCACCCGTCCATGAGCTCGCAGTCCAGTGGGGCCATGAGCTCTCGGGCCGCCTCGTCCTCATCGCCCCAAGCGGGCTCATCTCTACCCTGTGACTCTTTACGGCCTTCTCTCCCCAGTTTCTCATCGGGACTGTCCTCGGGACTCTCTGACTACTTCACACATCAAAACCAAGGGTCAACGTCAAACCCACTTATACACTAACTAAACATCCACAGGAAGCAGACTGTAAGTGAACATTCTGCACCCATTcacactgtaatatatatatatatatatatatatatatatatatatgaaaaaggaaaaaaaaatactgggaGAGAAAGGAACATGCAAGCAGCCGAACTCCAGgtattttgtattaaattcTTCAATTCTCCTCCTTTATTTCTGTACACGAACGTCAAGTGTCGAggaactgtttttttatgatttacacTGTCAGCAACGTGCAATGtgacaagatttaaaaaaagagggtAAAGAGTAGCGCTTTTTTTCAACGGCAGTACAAATTTTACATTAGaatgtgtatttaaatagtGGTTGCAGATTTGtctaattttaaatgtaaaaaaaaaatctaaaccatCCCATGGACACCACCAGTCCTCATGTTTGCAGTATTATCACGTATCATGAGCGCACTGGTGGAGTgtgatttttcaaattaacacaaaactattttgtttctttctttttttaaataaatgtgctCTATAAGTGCAGAATACCCGTTCCGATCCATGGCTCCTTGTTATTTTGTCAGTTTCATAGATATTATTAATGGAGTTAATGCACTCACAATGCGTtcttttatgcattttaaaaagtacaatttcTTTATAGACCAAAGAATGGGTATCAAATACATTTGTTTCAGTATTCACCATCAGAAAATCAGACGGTTTTGAAGGGAACAGACTGAATGCTTTTAGCTTGTGTTTTGCAAAATTAGGCTCCTGTGTGTGGTCACCACCAGGtcccatttctttctttttttgtaattaatgaAATGTCAATTCCTGTTGTAATTATAGGTTAACTTTGCGAAGTGTAACCGTGTTGAGTAAATGCCTCATAAAAATATTGAGTGAATGTTTATGTCGTCTTTAAATTCCATGGTTGTGATTTTGTGGTCTTATGCCCGTGTTTGTCGCTTAAACTGTTAAccgaacaaaataaaaataataggtTTATGTTCATTGA

Function

symbol description
foxg1a Predicted to enable sequence-specific double-stranded DNA binding activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye; neuron differentiation; and nose development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neuroectoderm; and presumptive telencephalon. Orthologous to human FOXG1 (forkhead box G1).
foxg1 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Predicted to be located in nucleoplasm. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
forkhead box protein G1

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257917.3 True 2525 mRNA 0.47 1 3482138 3484662

Neighbor

gene id symbol gene type direction distance location
LOC103028182 sptbn5 coding upstream 6377 3396459 ~ 3475761 (+)
trnav-cac_1 NA coding upstream 62139 3419927 ~ 3419999 (+)
trnav-aac_3 NA coding upstream 65227 3416839 ~ 3416911 (+)
trnav-aac_2 NA coding upstream 65898 3416168 ~ 3416240 (+)
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding upstream 88980 3365742 ~ 3393158 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding downstream 340966 3825628 ~ 3853124 (+)
LOC103022404 LOC108430680 coding downstream 368944 3853606 ~ 3858455 (+)
coch coch coding downstream 383891 3868553 ~ 3879318 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding downstream 423236 3907898 ~ 3915777 (+)
LOC103044683 NA coding downstream 522853 4007515 ~ 4011258 (+)
G77817 NA non-coding upstream 87262 3394380 ~ 3394876 (+)
G77804 NA non-coding upstream 181467 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 184696 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 269273 3212557 ~ 3212865 (+)
G77792 NA non-coding upstream 275924 3197217 ~ 3206214 (+)
G77847 NA non-coding downstream 57590 3542252 ~ 3549615 (+)
G77961 hectd1,LOC107694830 non-coding downstream 432142 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 528088 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 547601 4032263 ~ 4032562 (+)
G78057 NA non-coding downstream 551652 4036314 ~ 4036575 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 122394 3322085 ~ 3359744 (+)
G77722 NA other upstream 504044 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1017817 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1472720 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1773841 1697965 ~ 1708297 (+)
g2e3 g2e3 other downstream 281118 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 804845 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1967453 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3372692 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 4110045 7594707 ~ 7607664 (+)

Expression


Co-expression Network