tecpr2 (tecpr2,LOC107758275)


Basic Information

Item Value
gene id tecpr2
gene name tecpr2,LOC107758275
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3261791 ~ 3296653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672602.1
CGCTGTGGTCGCGGTACTCGCTCACGCGCTGCGGGGAAGAAGAGCTGGGAAACGACAACAACAGCAGACATGTCTGTTATTTATCCCGGTCAGATGTTCTCACGCTGCTGTCAGTCGGAGAGTTTAACACCGGCGCTGCTGGGTTTTGTTCCGTGAGAGGATACGCGGTTTTCCGCGGGGAGAGTCGCTGTGTACGCGCCAGGCTGTGCAGGCCATCTCGCAGACATGGCGAGCCACCCACCTTCCATTCCCCTCAGGGAGTTCTGTCCCCTCTACTACCTGCTCAACGCCATTCCTGCGAAGGTTCAGAAAGGTTTTCGCTCAGTCCTGGTCTATCTCACAGCTCTTGACAGCAACAGTGACTTCATAGCTGTGGGAAGCAGTATTggaatgctgtatctgtactgcAGACGAGTGAGCCAGATGAACAAGTACAACTTGGAGGGAAAAAGTGAAGCCATCACTGTGGTGAAGTTGCTAAGCTGCTTTGACGATCTTGTGGCAGTGGGTACAGCATCTGGCAGGGTTGCCCTGTTTCAGCTTGTGTCACAGTTGCCAGGCAGGAACAAACAGCTGAGGCGGTTTGATGTGGTCGGACTGCACAAGAGCACGATTACAGCATTAGCATGGAGCGCTAATGGCATGAAGCTCTTCTCAGGCGATGACAAAGGAAAAGTGGTCTACTCTGCTGTGGACCTGGACCAgGGTGTGTGTAACCCAGTGGTGCTGTTGGAGGAGCCGTCCGCTGTAGTTCAGCTGGAGTACAGTCAGAAAGTGCTTCTAGTTTCTACCTGTCAGCGCTCTCTCCTTTTCTACACTCAAGAGCAATCTCTACAGCAGCTAGGCACCAAACCCAGAAAAAGCAATGGCAAGTTTGGTGCTTGCTTCCAGCCTGGCCTGTGTAAGCAGAGTGACCTGCTGGTGTACGCAGCACGGCCTGGTTTGCGCCTCTGGAGGACGGACGTGCGAGGCCGTGTACAGGAGACCCATGTCCTCAAGCCCCTCTTCAATCAGGACGTGCCTCAGTTTGAGCTGTTTCCCCGGTCAGGCCCCACTGGTGCTTACCGGCCCACAGAAAGACAACTGGGCCTGGTCAGCTGCTTCCTGAAGGACGGCTGGGTGCTCAGCTGGAATGAGTACAGTGTCTATATAGTGGACTGCACCAACCAGGTCATTGTTGGTGGTCTGGAAAGCAGTGGAGACATAGTTTCTGTGTCCTGCacagaaaatgaaatcttcattcTGAAAGGTGATCGAGACATCATGCGGATCTCCAATTGCCCAGAGGGACTGGTCTCCAACATGTCGGATCTCTCTTTGCGCCTAACCTCCCCTCTTTCCACACCGACCATCCTGCTCCCCCCAAATGGCGCTGTGGAAACGGCACAGCCAATCAGGACCATGCCCATCATTGTAGAGCGGGAGTCAGACCCCAGCCCTGTGGAGCGGGCCGAAGTCGAGGACTCTGAGGAGGTGCATGAGGAGTTTAGCCAGGCACTGGAGGCTCTGGAGGTGGGCGAGGAGATGGAGGGCCAGCAGAGGGTGTTTGTGGACATGAGGAGCCGAAGTAGTTCAGTCACTTCATGGGAAAGTGCTCAGGGTGTCTTCACAGCCAGCACCCCAGCCACAGAGGCCTCGGAGCTGTCCTCCAGCCGCTACAGCGCCATCACCCAGGAGGACTTTCAGCAGGAGCTGGTGGTCAAGCAAGTCAAGCTGAAAAAGAAGGGCAAGAGGAGAAGGCAAGAGAGTGGAAACCGTGTGAACGAGCGCAGCAGCTGGTCAGAGGGCATGTTTAGCCATGACGGGATGGCCAGCGACGCTCTGGCCACCCCCCTTAGCGAACCCCCCTCGGACCGCACCAGCCTCCTATGTAGCAGTCTGGACCTTCACAGCAACGGCTCCCCTGATCAGGAGGGCTCCATCTGTGGAGAGACGCTTCTGACGCCGAACCTTCCGGACCTGCTTCAGAGGCAGGAACAGAACGAGAACCAGGACCAAGAACCGGGAGCGCATCTCTCCTTTCCGACATCTCTTCCTCTACAGGAGATGGAGTGCCAGACTTACGCCGAGAGTGAAGCACAGATAGCAGCTACACCGGATGTGGATATACTCCTGGAATGCACGTTCTCGTACGTTCAGGCAGCTGAGGAGAAATCTGTGATGGAGGAGGATGCTAAGGATGATGCTGGACTCCTGCAGCAGGATTTGCACAGAGACTTTGACTTGGACTTACCGTATGACCCTATCAGGCCTCTGGCCTGCTCACCAGAGCCAGAACATGAACCATCTCCCTCTAGTGATGAGGAGGATATTTATGCACATGGTGTGCCTTCCAGTGCTAGTGTAGGGGACGGACTTAGCACTCTCACCCTTCAGGGTTGTGCCTCTAATCGTGCAGAGCAGGAAGAGGCACGGCTTCTTAAAGATCAGCTGGCTGAGAGTTGGATGGGCTATAGCGGACCGGGCTGTGGCATCCTCAGCCTGGTGGTAACAGACCGGCACGTCTGGTGTCTGGATTTTAAAGGAGGTCTGTACTGTAGTGGCCTCCCCAACGGCGGTCTGAGCTGGCAGAAGTTTGAGGAAAATGTCCAGCAGGTGGCGCTGTCCCCCTCAGgcTCATTACTGTGGAAAGTTGAACAGAAGACCATGACGGCCTACGCCTGCGGTAAAGTCACCATCAAGGGCAAGAGACATTGGTATAAAGCTCTGGATGAGACCGCCTTCGTGGCTCTGAGTGATGACACAGCCTGGATCATCCGAACCAGTGGAGACCTTTATCTGCAGACAGGGCTGAGCGTGGACCGTCCATGTGCGAGGGCAGTAAAAGTGGACTGCCCCTGCCCCATGGCTCAGATGGCAGCACGGGGCAGTGTCGTGTGGGCCCTCAGTGAGCAGAGGGCTTTGTTCTACAGAGAAGGTCTTAGCAGCTACTGCGCAGAAGGCGAGCAGTGGAAATATGACAAAGTCAGTGAGAATCAGGGACTGGAGCCCATCTGCATTGCCTTGGGTGAGAACAACACGCTGTGGGCTTTGGACACCATCGGCAGTCTGTGGTTCAGAACAGGGATTACCACTAAGAAACCTCAGGGCGAGGATGAGCACTGGTGGCAGGTGAGTATCACAGACTACGTGGTGTTTGAGCAGAGCGGCCTCTTCCAGACGCTGATCCAGGCCACACAGAGCGTCGCAACAGCCACCAAGGCCCCCGTGGAGCGCGTAGCAGAGCGCCTACGCGTGGCCTTCCTCTCCCAGCAGTCCCAGTGCCAACCCAGCCTGGTCAGTGCCAACAACAGCGGGGTGTGGATCGCCTCGGGACGCAATGACTTCCATGTAGCTAAGGGCAGCCTTGTTGGGACATTTTGGAGGACTATCGTTCCCAGAGGAACAGCATCTGCTACTAAATGGGCATTTGTGTTTTCATCAGCAGTTCCAGGCAAAGAAGGCAGTTTTCTATGGCTCGGACAGAGCAGGAAAGACCTGTTCTGCATTTGGGACCAAGACCTCCAGATGCGCCCCCTCACAGTCCAGCTTCCCCCCGACATGGAGATGGTTCAGCTCTCTGCGTGCCGGGACGCACTCTGGGGCCTGGACAACCACGGCCGCGTCCACATCCGCACCCTGTCCCCCAGCTGCCCCACTGGCATGCACTGGACGCCCCTGGACCTCAGCCAGCTTGGCCGTTTGAGGCTGATCAGCTTCTCATGCGGCAGTCAGAATGTGTGGGCGTGTGACACCAGTGGCATGGTGCATTTCCGAGTGGGAACACAACCTCTGAATCCCAGCATGATGCTCCCTGCCTGGATCTGCATTGAGCCGCCTGAGCAGCCTGTTGGTGTGCACTTGGTGAGAGTTCAGACGAGTCCTAACGACCGGATGCTGTGGGCTCTAGACAGCCGGGGGAACGTTCACGTGCGCACAGGAATCACAGAGGAGATGCCAGTAGGGACAGCCTGGGAGCACATACCTGGGCTCCAGGCCAGTCAGCTGGTGCTGAGCACAAGAACTGCCTGGGTACGCTGTCATAACGGTGAGGTAGCGCGACGGTACGGGATTTCTGAAAAGAACCCAGCTGGAGACTACTGGAAGAAGGTGCCAGGTCTGGTGAACTGGCTCGCAGTGACTCCTCTGGATGAGCTGTGGGCGCTAACTCCAGCCGGTGTTCTTACACAGCGGCTCACTAAAACCCTGCCTCACAACGCCGGCAAAAATCACGGCAACACCGGCTCTCTCAGCGGGGAGGAGCTTGAAGAGGAGTGGGAGGTGATTTAGGCCATCTATTGAAACGATTCATTCTTAGCTGTTCTTGTACAGACGGTTGTTTTATTCACTAGTGGGCACTttacttcttttgtttttaaccCGTGTACAGACGTGAAAAAGGGATCGGGTGCACAGAGTGTACAGATCTGTATTGGAACTGTAGAAAGTGGAATTTAGCAGGACAGGCTCAACAGGGTCGGTTGTTTTGCTTTTTCAATGCACCTTGTAACCAGAATCcacaatctttttattttattacattttattaatcaaccccctatttatttttttaatgtaagctAACAGGATCAATTGTTTTATGagttttaaaaagctgaaaagATGTGGTCAGTACCCTGGTGCACTTAGTGAAACGTTTAATGTGAAAGGACCtcttataaatatttgtttagaGAGAGTTTACATAATACCATAGATAATACAATACTACTACAACCTGGATCCATATGTACCAGGCCAACCAAGGCCAAACCTTATGACGATTAGTTATCATCATCTACCCCTATTTAATTGATTATATGGATAAGAATTGTTGTTGTTgcatttttctgttccaccttaaatcatgcAGCAGCCTCAGGTGAGAAAATTTAACttctgcaccatttaaggtggaacaggaaatgtAGGATTTTTGTTTCGGATTGTTATGAAGGAAAAGCTATAATTCATTGAAACTACATTAACCTAAGGTAATTCAATGTTATCAGAATTTTTAACAACGAATATACTACATCTGTGGGTTTTTGGGTGCTTGTGCAGCCCACCCTGCTGTTGATTTCTCATAACCTTTCATTTGCAGACCTGCCAACATGTACGCATTTCCACGTCCTTGTACGATTTCATGTTCTATGGTACGCATATCGTTTGATATCACATTTCTCCATGTCGTCGCAAGTTTGTTTGCTGTGCGGGCGGCCGCATCCGCTCGGCAAAGGTGCCAATCTTCCAAGCTACCTATCGCTACTTTCCTCCTCTTTATTTTCTTCCAAACAGTCGAAAAccatcactgtgctgaagactctcaaGCACTATCAAAATCGCAAAATTATCTATGAACCTTCATATCCTTTGTATTAGGACAACCATAAAAAGCATATGGCGTAgaataggggtgtaacggtacgtGTATTCTTTATGAGCCGTCCCGGTATGGAGGTCACAGTTCGGTTCGCGCAAACGCAGAATACACGGTACGAGATTTGTGGAACCAATGAACATAATGCGGAACTAGAGTACAGAGAGCGTACGCAGAAACACATATTTTTATcacaaaaatgaatgtaattaaatttttttatttaaatacccattattacccattaattaactaaaaacctGTGAAATCTGTTAAGTCTCATGGTTTACACATATGTGTAGTGTTTGATATTTTcagtttaaattttttattgttggtgatttaatttattttattttttttaagttttaagtaaataaaaaatgtcttaaacaTATAGTTTAAATTTATTGAGCAAcaaattattattctttttaaaaaagcgCACACTAGTACAATATAAGacttttacaaacacatttttgggTAATACAAACTATTGTTTCAAACTGTTGGAGATCAATCGGGAGTTCTGGTTTGTACTCATAAAATTATTTCAAGTTTGGCAGGTCTGCATTTGGAGTGTATCTTTGAAAAATCTCTATCTCCAttcaccctacccctctatctcacAACAAGAATCCAACAAGTACTAATATGGATTTGGGCCTctttaggctacgttcacattacaagccatattgctcaaatgtgattttttgtttagatcttgacggttcacattcac

Function

symbol description
tecpr2 Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 49. Orthologous to human TECPR2 (tectonin beta-propeller repeat containing 2).

NR:

description
tectonin beta-propeller repeat-containing protein 2

GO: NA

KEGG:

id description
K23881 TECPR2; tectonin beta-propeller repeat-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672602.1 True 6107 mRNA 0.50 20 3261791 3296653

Neighbor

gene id symbol gene type direction distance location
eif2ak4 eif2ak4,LOC107673787 coding upstream 304361 2908609 ~ 2957430 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding upstream 397352 2760670 ~ 2864439 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding upstream 787000 2471398 ~ 2474791 (+)
LOC103026471 LOC100304858 coding upstream 793229 2465310 ~ 2468562 (+)
fsip1 NA coding upstream 949129 2247051 ~ 2312662 (+)
rcor1 rcor1,LOC107719500,LOC107590914,LOC107733187 coding downstream 13165 3309818 ~ 3324750 (+)
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding downstream 69089 3365742 ~ 3393158 (+)
LOC103028182 sptbn5 coding downstream 99806 3396459 ~ 3475761 (+)
trnav-aac_2 NA coding downstream 119515 3416168 ~ 3416240 (+)
trnav-aac_3 NA coding downstream 120186 3416839 ~ 3416911 (+)
G77799 NA non-coding upstream 48926 3212557 ~ 3212865 (+)
G77792 NA non-coding upstream 55577 3197217 ~ 3206214 (+)
G77724 NA non-coding upstream 275081 2950074 ~ 2986710 (+)
G77727 NA non-coding upstream 294690 2964050 ~ 2967101 (+)
G77721 NA non-coding upstream 366157 2894872 ~ 2895634 (+)
G77817 NA non-coding downstream 97727 3394380 ~ 3394876 (+)
G77847 NA non-coding downstream 245599 3542252 ~ 3549615 (+)
G77961 hectd1,LOC107694830 non-coding downstream 620151 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 716097 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 735610 4032263 ~ 4032562 (+)
G77722 NA other upstream 283697 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 797470 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1252373 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1553494 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 1564810 1693356 ~ 1696981 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 25432 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 469127 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 992854 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2155462 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3560701 6857354 ~ 6872405 (+)

Expression


Co-expression Network