rcor1 (rcor1,LOC107719500,LOC107590914,LOC107733187)


Basic Information

Item Value
gene id rcor1
gene name rcor1,LOC107719500,LOC107590914,LOC107733187
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3309818 ~ 3324750 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672603.1
GAGTTGTGTTTGACAAAACCTGCTCGTTTCTCGGCGGTTTTTCGGTTCTGGGTGGAAATATATCGACTATCGGCTCTGTGAGGAAATGCTGGAGTTATTATTAAAACTAAGGTCGGCTAATGCTAGCTGTTATCTGTGTTAGCTCGGTGGCTAACTCTCTATCAgtgtagcctgtgtgtgtgtgtgtgtgtgtgtgtgtggagggggaggTGGggagttagcctgttagctaacagCGGAGCTAGCCGGCTATAATCCGGTTACTTCCATCAGTCGGAGTAACCTGCTCGCTCAGCGCGGTCGGTGCAGCgggctagctaactagctaacgacCCCGGAGACAGGCGCCAGTTCCCGGCCTGAGTTTATCGAGCGCCCGCTGGTTTAAGCGCACTTTGTGGGAACTTGTTTAATAGcggtttaatattatattcacacTCGGAGTTTAAGCAGAGGAGGCCCTTCGCCACAGATTAGCCTCCGGagcatctgctgctgctgctgctgcggtcGGTCGGGCTGCGTTAGCCGCTAGCAGGCGAGCCAGCGAGCAGCGCTGCGCGTTTCAGCCGCTAAAGTTCCCCGGCTTTGTCTCCGAGATGCCCGCGATGTTGGAGAAGGGCCCGGCGGAGATCTCGGGCAAGAGGAGAGGCAGGAACTCGGTAAACAACCCGGTCAAAAGTTTCACTTCGAACGGGAACAGTAACAATTCGTGGGAGGAAGGAAGTTCGGGCTCCTCAAGTGATGACGAGCATGGTGGTGCGGGAGGAATGCGAGTGGGTCCTCAGTACCAGGCAGTGGTCCCGGATTATGACCCCGAGGTAGCAAAGGCAAGCCAAGAGAGGGAGAACTTGGGAATGCTGGTCTGGATTCCCAACCAGAACTTGGCAGAGACTAAATTGGATGAATACATTGCAATCGCCAAAGAGAAACATGGGTACAATATGGAGCAGgCATTGGGCATGCTCTTCTGGCACAAGCACAACATCGAAAAGTCTTTGGCGGACCTGCCCAACTTCACCCCTTTCCCAGATGAGTGGACAGTGGAGGATAAAGTGCTGTTTGAACAGGGGTTCAGCTTTCACGGCAAGACTTTCCACCGCATACAGCAGATGCTTCCAGACAAATCCATTGCAAGCCTGGTTAGATTTTATTACTCTTGGAAGAAAACCCGCAGTAAAACCAGCGTCATGGACCGACACGCTCGCAAACAGAAGAGAGATCGAGAGGACAGTGATGAAGAAGGTGAGGAGACCAACTGCACCACTCCACCTAATCCAGAAGTAGAGGTGAacaaggaggagaaaaaagagCCACCAACTGTCCCAGAAAAGCCAGCACACGTGAAGAAAGAGACGCAGGGTCTGTCTGGCCGGAACCTCAACCGGGCCAAGAGGAAGCCACCCAAAGGCATGCACCTGAACCAGAGTGACGCCTCAGCCATGTCCAGCAGCGGTAATGCAGCTACCAGCGTACTGAGGCAACTGGACATGGAGCTCGTCACCATTAAACGACAGATCCAGAGcatcaaacaaaacaacagtgcTCTGAGAGAGACACTGGATACTGGAGTGGAGGAGTTCCGGCCTCCTGAGgtgaATCAGAAGTTTAATACACGTTGGACTACAGAGGAGCAGCTTCTCGCAGTACaagCCATAAGGAAGTACGGAAGAGATTTCCAGGCCATTTCGGATGTTATTGGCAACAAATCCGTTGTTCAGGTGAAGAACTTCTTTGTAAACTACCGGCGACGCTTCAATCTGGACGAGGTGTTGCAGGAGTGGGAGGCTGAGCACGGAGTGGAAGGATCAAAAAGCTCAGAGGAGGAGAAGATGGAGGTGTCGTCTGAGGAGGGCACCACCACCCCTGTACCACCAGAGGACCAGAAGGAGGAACCGACACCTACAGAAACGCAAACGCCCTCAGCCTCCTGAGTGCCCTCGCCACGGCCAGATGACCTCTCCTTAACCCAAACGCAATCCAGCTGATGTTACTGCTGTGCTGAAGAGGCACCAGGGCTTCTACAGCCCCCTGTGTAGCTGCTTAATACCAACCATTCCCACTCCTCTGTCCTTCCTCTGCTCCCTCAACCCAGCCCAACCCCCCGGACTCCGGCACGTTCTGCCAAACAGAAGCTCAAAACCTCATCAGAACCGAACGCGGAGTAAGAAATAAGGAATAAGGACGGATCAGCTTTATTTTAGCTGCTCTCTGCCAGCACAGATGGGCAGCGGTGCTTTTTAAGCACTGCTTTCACTTACTTTTCATAAACGTTGAGGATGTAAATGAATTCGCTGATCTGATTGGATGATCTTCCGTCCCAGCTTCACTGTACTTTGTTTCATGGTCCTTTAACACAGCCTATGTGAGTAGGTGCTGATGAAGTTGCCTGGTTATTCTCACTCTCTGTTTTAACTGTCCCACCCTCTCTAGTGgactttcactctttcactgaCCAATCTCTCTCATCTCATActccactccagcaaaccaAAATCTTCATTTCATGTTTCAGTTTTGTCTTTTTCCAGCAGTTCACACAGCGATCAGATTGAGTACGTGTTGTAATTTTAAATGACTTCGGTCCACAGTTCTATCATGAAtctatttatttgctatttgcttaaaaagtGTTTTCGAGTTTCAGGAGAGCGAAGATGTTACCAATAATAATGAGAGACTGTGTTTTAAGGGGGAATCTGGAATTTTGATGACTGGTCCTGTTTTCCTCTACATGATTGAAAGTGGAAAAGTGAATAATCTTTATCACTTAAGTTATTGGTGAAAAaatgatagtaataataataa

Function

symbol description
rcor1 Predicted to enable transcription corepressor activity. Acts upstream of or within hemopoiesis and regulation of retinoic acid biosynthetic process. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in eye; head; intestine; and optic tectum. Orthologous to human RCOR1 (REST corepressor 1).

NR:

description
PREDICTED: REST corepressor 1-like

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11829 RCOR1, COREST; REST corepressor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672603.1 True 2808 mRNA 0.50 12 3309818 3324750

Neighbor

gene id symbol gene type direction distance location
tecpr2 tecpr2,LOC107758275 coding upstream 13165 3261791 ~ 3296653 (+)
eif2ak4 eif2ak4,LOC107673787 coding upstream 352388 2908609 ~ 2957430 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding upstream 445379 2760670 ~ 2864439 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding upstream 835027 2471398 ~ 2474791 (+)
LOC103026471 LOC100304858 coding upstream 841256 2465310 ~ 2468562 (+)
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding downstream 40992 3365742 ~ 3393158 (+)
LOC103028182 sptbn5 coding downstream 71709 3396459 ~ 3475761 (+)
trnav-aac_2 NA coding downstream 91418 3416168 ~ 3416240 (+)
trnav-aac_3 NA coding downstream 92089 3416839 ~ 3416911 (+)
trnav-cac_1 NA coding downstream 95177 3419927 ~ 3419999 (+)
G77804 NA non-coding upstream 9147 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 12376 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 96953 3212557 ~ 3212865 (+)
G77792 NA non-coding upstream 103604 3197217 ~ 3206214 (+)
G77724 NA non-coding upstream 323108 2950074 ~ 2986710 (+)
G77817 NA non-coding downstream 69630 3394380 ~ 3394876 (+)
G77847 NA non-coding downstream 217502 3542252 ~ 3549615 (+)
G77961 hectd1,LOC107694830 non-coding downstream 592054 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 688000 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 707513 4032263 ~ 4032562 (+)
G77722 NA other upstream 331724 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 845497 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1300400 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1601521 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 1612837 1693356 ~ 1696981 (+)
g2e3 g2e3 other downstream 441030 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 964757 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2127365 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3532604 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 4269957 7594707 ~ 7607664 (+)

Expression


Co-expression Network