CI01000009_01110684_01111118


Basic Information

Item Value
gene id CI01000009_01110684_01111118
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1110684 ~ 1111601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01110684_01111118.mRNA
TCAGCGCCCCAGAATCTGTTCCGCACGGATCTGATCAGCACCAACACCAACAGCATCTCACTGGCCGGCAAGCCCGTGTACTCGACCCCGTCTCCTGTTGAAAACACCCCGCAGAATAATGAGTGTCGGATGGTGGAGCTTAGGGGCGCCAAGGTGGCCTCTTTCACAGTGGACGGACAGGAGCTCATCTGCCTGCCTCAGGCTTTTGACCTGTTTCTCAAACACCTGGTCGGGGGTCTGCACACCGTCTACACCAAACTCAAGCGGCTGGAGATCACGCCGGTGGTGTGTAACGTGGAGCAGGTCCGCATCCTGCGCGGACTGGGGGCCATCCAGCCCGGGGTCAACCGCTGCAAACTCATCTCCAGAAAAGACTTCGAGACCCTCTACAACGACTGCACTAATGCCAGGTCAGAACAAGTGCGACTCTTTTAGTGCTCAGAAAATCAATAGATTACAAGTTAGATAACAAGTGAAGTGAACTTTACAATACAAAGTAAAAAGAGTACAACTAATGTACTTATTATTAGAGTTATATGTGGAACAAATGTGGAGGACATTTGCAAATACTTTCACATTTGTACTTGCACTTTAAAATATATATGTTCCAATTAGAACCCAAAATGATTTTTACAGCCGGATGCAACATTACAATTGTTTTAAGTTCAACCAAGAACTTTTTATTATTTTTGTAGTTTTATGTACTGTTATTTACTTATATTGTGACATCAATAACTTTAATCTCAAGAAGTTCTTGATAATACAGGGATCTTTGCTAAACCAAATGTGTCATTGAAGAAACATATCATTAAAATAATTATAATAAAAATATATAACAATGTGCGACTAATTCTAGAATACTATAAAGTAAATAATTCAACTTTTTGCAATGGTAGAAAGTGGAATATAATAATGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01110684_01111118.mRNA True 918 mRNA 0.41 1 1110684 1111601

Neighbor

gene id symbol gene type direction distance location
CI01000009_01034561_01035452 KLF12 coding upstream 74956 1034561 ~ 1035728 (+)
CI01000009_00920570_00955979 TBC1D4 coding upstream 154110 920428 ~ 956574 (+)
CI01000009_00913995_00916434 COMMD6 coding upstream 194119 913995 ~ 916565 (+)
CI01000009_00852319_00853083 CX45.6 coding upstream 257223 851242 ~ 853461 (+)
CI01000009_00805606_00808374 NA coding upstream 302280 804904 ~ 808404 (+)
CI01000009_01183737_01206031 NA coding downstream 70490 1182091 ~ 1206857 (+)
CI01000009_01219880_01224537 NA coding downstream 108036 1219637 ~ 1224869 (+)
CI01000009_01351236_01380055 CLYBL coding downstream 239635 1351236 ~ 1380285 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding downstream 289460 1401061 ~ 1407755 (+)
CI01000009_01431700_01434463 NA coding downstream 319249 1429873 ~ 1435328 (+)
G50972 NA non-coding upstream 5392 1104628 ~ 1105292 (+)
G50951 NA non-coding upstream 6200 1103278 ~ 1104484 (+)
G51031 NA non-coding upstream 109462 1000996 ~ 1001222 (+)
G51028 NA non-coding upstream 114412 996044 ~ 996272 (+)
G51017 NA non-coding upstream 136725 973711 ~ 973959 (+)
G50961 NA non-coding downstream 99949 1211550 ~ 1217229 (+)
G51036 NA non-coding downstream 173259 1284860 ~ 1285420 (+)
G51039 NA non-coding downstream 176599 1288200 ~ 1288672 (+)
G51041 NA non-coding downstream 178942 1290543 ~ 1290776 (+)
G51043 NA non-coding downstream 191998 1303599 ~ 1304068 (+)
G50920 NA other upstream 340451 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1014897 94371 ~ 97230 (+)
G51122 NA other downstream 568545 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 782634 1897343 ~ 1919516 (+)
G51274 NA other downstream 1143498 2255099 ~ 2350486 (+)
G51529 NA other downstream 1950432 3062033 ~ 3062587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037234 dachd coding NC_007120.7 CM002893.2 30820290 ~ 31062704 (+)
bowfin (Amia calva) AMCG00014562 dach1,LOC105030421,LOC106586049 coding CM030128.1 CM030128.1 17935166 ~ 17935714 (-)
bowfin (Amia calva) G83602 NA non-coding CM030130.1 CM030130.1 3734677 ~ 3735207 (-)