CI01000009_01219880_01224537


Basic Information

Item Value
gene id CI01000009_01219880_01224537
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1219637 ~ 1224869 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01219880_01224537.mRNA
CTATAAATACAGAAGCATCAATAATAGAGTGCCGTGTGACACTGACAGAATGGGCTATCAATCATATGTGCTTGATTGGGCATGCTTGTATAGATGTTAATTTTACATCTCACAAACAATCTGGGTGTATAAACACCAATTCAGGAAAATAATGATTTATTTTACAGCACAGTACTACATGGAGTGTGTCATCTGTTGTGCTGAATGTGTATGTTTCTCTGTTTGCCACCAGAAGAAACCCCCATGTGCACGCCAACTGCGAGAGATGGCTATGAGAGGCTGTCGTTTGCGGGTCAGACTTTACCTCCAGGATTCCCTTCACCCTTCCTGTTCCCTGATGGCCTGTCGTCTATAGAGACCCTTCTGACTAACATCCAGCTGATGTGTTTCCCCATCAAAACAAATGCACAGCCGCATATATTCACCACGACTCCCTTGATCACCACTGTGGTTGTCATGCAAGGCTTGCTGAAGGTGGCAATTGATAACGCCCGCGCTCAAGAGAAACAAGTGCAGCTGGAGAAGACGGAGCTGAAGATGGAGCTGTTTAGAGAGCGAGAGCTCAGGGAAACCCTGGAGAAACAACTGGCTGTCGAGCAGAAGAACAGAGCAACCACCCACAAAAATGTTTGCATGGACAAGTACCAAAAAATCTCCTTAAGTGAACTTCAATGAATATTTTCAAAGTATAGAACAATTATTGCAAAAGTGCATTAAAATAACCTGAAAATCCATGTTACAAGCTCAGTTGTTAATTACAAGCACACAAAAAAGCATGCTGCCAAAGTGATAGAGACAAGGTCATAAATCGAGCAGAATGAGGCATATTCACATTACGATCAATACATGAGCACAAATTGATTATGTGTGCAGAAGTGCTTGTGGGAATACAGTATATTACCGTAACTTCATACATAGATGATGTCTAAATGCACAGGGTGCATTAGAAAGATATACTGTACAAAGCTTTCATTCCAGTGAGTGTGGTTAAACTCATGGAAACATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01219880_01224537.mRNA True 1007 mRNA 0.42 4 1219637 1224869

Neighbor

gene id symbol gene type direction distance location
CI01000009_01183737_01206031 NA coding upstream 12780 1182091 ~ 1206857 (+)
CI01000009_01110684_01111118 NA coding upstream 108036 1110684 ~ 1111601 (+)
CI01000009_01034561_01035452 KLF12 coding upstream 183909 1034561 ~ 1035728 (+)
CI01000009_00920570_00955979 TBC1D4 coding upstream 263063 920428 ~ 956574 (+)
CI01000009_00913995_00916434 COMMD6 coding upstream 303072 913995 ~ 916565 (+)
CI01000009_01351236_01380055 CLYBL coding downstream 126367 1351236 ~ 1380285 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding downstream 176192 1401061 ~ 1407755 (+)
CI01000009_01431700_01434463 NA coding downstream 205981 1429873 ~ 1435328 (+)
CI01000009_01454610_01484907 NA coding downstream 229355 1453708 ~ 1485828 (+)
CI01000009_01570544_01595199 NA coding downstream 345210 1570079 ~ 1595466 (+)
G50961 NA non-coding upstream 2408 1211550 ~ 1217229 (+)
G50972 NA non-coding upstream 114345 1104628 ~ 1105292 (+)
G50951 NA non-coding upstream 115153 1103278 ~ 1104484 (+)
G51031 NA non-coding upstream 218415 1000996 ~ 1001222 (+)
G51028 NA non-coding upstream 223365 996044 ~ 996272 (+)
G51036 NA non-coding downstream 59991 1284860 ~ 1285420 (+)
G51039 NA non-coding downstream 63331 1288200 ~ 1288672 (+)
G51041 NA non-coding downstream 65674 1290543 ~ 1290776 (+)
G51043 NA non-coding downstream 78730 1303599 ~ 1304068 (+)
G51059 NA non-coding downstream 127144 1352013 ~ 1352423 (+)
G50920 NA other upstream 449404 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1123850 94371 ~ 97230 (+)
G51122 NA other downstream 455277 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 669366 1897343 ~ 1919516 (+)
G51274 NA other downstream 1030230 2255099 ~ 2350486 (+)
G51529 NA other downstream 1837164 3062033 ~ 3062587 (+)

Expression


Co-expression Network