CI01000009_02449805_02450173 (NHLH2)


Basic Information

Item Value
gene id CI01000009_02449805_02450173
gene name NHLH2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2447997 ~ 2450356 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02449805_02450173.mRNA
ATATAAAAGGGATTTTCTTAAAACGTCATAACTGAACAATTAATTTAGTCATAATTTAGTTAATTTAGCTGAAACTTTTACAAACAATTGCACCAATTTAACACAGGCGTACAACCAATGCGTTACTGCCAAACACATGAGTCCAGCTCTAGCCTCAGGCGCTCCTTTCAATCTGGTCGAGAAAGAAGTCGCTGAGTGGAAGGAGAGAGAAAAGAGGGGGTTGGACGGAGGTGTGACTGTCGTGGATAAGTGCATAAAGTGAATGATTTGTGAGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTTATAGGGAGCCAGTGGAATGTTATCTCTCAAATCATCAGAGGCACGAGGACAAGCACGCGTGGTTGTAAGGATGGCTGGAGCAATATTATCCTAATCCACGGGAAACAGAAAAGAGGAGAGCCGGAGACGACACTTTCTTATCTCATCGATCTTATCTGAGGACGCGTGTCCATTGTTATCCGCACACGGGTCAGAGGGCAACACATCTCAGAGCGTGCGTTACCGGTCCTGTTATTATAATATCCATTCTGTAACACTGTTCACGGAAATTTCATCATACAACAACAATCTACGATACCGGCTGTGTTATAAGTGGAATTAGTGGCGAGGAAAATATTAGGCTGAGAAATGCTGTTGCTCATGCCAGAATAAAAATTCAGAAAGCACAATGGACAGATGAACATGAAACACTAAAACAGATTTGATAAAGGGGATTTTGGGGAATAAACTGATTCTCGTCCTGTTCATCGTCAACAGAGGTGAGTTTCAAATCAATTTCATAAATGTTGGTAGATTAATACTTTTCAGTCATGTTCATGTTATGATTATTGTAAACACTTTACATTACAGTGTTCATGTTACATACATTAAATTGCACTAGGCTATATTAAATTATTAGCTATAGCAAAAGTCTATGATTATGGGCAGCTCGCCAAAATAATTATGTACATTGATATTGTATATTGTCATCATTTTATCATAACAACGTCTTAGTTTTCCTCTGTTTAAACTCGATCTTCATCAGTAATTAAAGTGCAATGAACTAATCTTGGAAGCTGTCACTTTGGCAACGCTTTGATTTTGATTTTTTTCTTTTTCTTTAAAAATTTAAGACAGCAATTAAAAAAACGTTTTCAGTTGTAATGTATAGAATTTTTATAGTGTTAGTTCTTTTGCAAAATTCAGTAGGTAATAACATGCAAAAAAAAAAAAAAGTACAATTTTAACGTACAGTGCGCTCAGACAAATCATTATTCTAAAACATTCAACTTATAACGAAAATATAAATAAAAAAAAATCAATGGAAAAAAAGACTGGTTCCATGCATCTTTGTGTCATCTGGAGCTATAGGTTTTGCATTTGCATTTGCGACAGATGGTCAACTATGACTTGGGTTTTGTGACAATAATTGATTTCCATTAACTTTTGCGTAGAACCAGTGAATATTCCATCTACTGATGGAAATGTGTGCTGAATGAGCCAAACTGCAAAATGCACACAACAACCATTTACAAACATTTAGTAGCTACTGAACTGTTTCTAAAGTAACACAAACGAATAGCCTATCCATGAAGCTGCATACAAACACTGAATGTTATACCTTAAAATAGAGGTGAAATAGCCTACAAGCAATTAATTTATTTTAACATTATGTACAGATTACTATTTATATGTGGAAAAACATAAATCCTTTGTGTCTAATTCACCAGGGCAGTTAACAATCAGTGCACTTTTGAAGTTTTTATCAAACGGATCTGAAAATGATGCTGAGCCCCGATCAGACGGATCCTGACCTCACCTGGGCACAGTCGGACACGGAATGTCTGAACATCATGAAGGTGGAATGTGTGGCTCACGAGCCCTTAGAGGCCGAGGACGGCAAGACTCGCGCACTCGTGCCAGCCGCGCTCACTAGAGAGGAGAAGAGACGGAGGAGGCGCGCGACTGCGAAGTACCGCTCTGCGCATGCCACGCGCGAGCGCATCAGAGTGGAAGCGTTCAACGTAGCATTCGCTGAGCTTAGAAAGCTGCTACCAACACTTCCACCCGACAAGAAGCTGTCAAAGATAGAAATACTTCGTCTCGCTATCTGTTACATTTCTTATCTTAACCACGTTTTGGACGTTTAGACTAACTTTCAGCGCATTATACAGCATTCTGAACAAAATCCTACAGGTGTATAATGAATACTTTTATTGACATGACAGCTAGACTCACAAACATTAAGAAAAATGGGTAACACTTTAGAATTCAGTAACAGGCCTACAGTATGGAATGATATCGAACTGTCTGTCCTTAAAATAGGCTACCCA

Function

symbol description
nhlh2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to several human genes including NHLH2 (nescient helix-loop-helix 2).

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09075 NHLH, HEN, NSCL; nescient helix-loop-helix protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02449805_02450173.mRNA True 2360 mRNA 0.39 1 2447997 2450356

Neighbor

gene id symbol gene type direction distance location
CI01000009_02426085_02433745 CNGA4 coding upstream 14202 2425575 ~ 2433795 (+)
CI01000009_02398010_02399639 NA coding upstream 48245 2396065 ~ 2399752 (+)
CI01000009_02375481_02385887 NA coding upstream 61996 2375076 ~ 2386001 (+)
CI01000009_02284485_02285584 NA coding upstream 161868 2284485 ~ 2286129 (+)
CI01000009_02233367_02235148 RABL3 coding upstream 212204 2233367 ~ 2235793 (+)
CI01000009_02479541_02488142 VANGL1 coding downstream 29185 2479541 ~ 2488759 (+)
CI01000009_02499173_02519062 DOPEY2 coding downstream 48613 2498969 ~ 2519155 (+)
CI01000009_02572388_02587828 USP9, USP9X coding downstream 122032 2572388 ~ 2588051 (+)
CI01000009_02596511_02597101 NA coding downstream 145610 2595966 ~ 2597112 (+)
CI01000009_02601021_02609375 DDX3X, DDX3A coding downstream 150665 2601021 ~ 2609377 (+)
G51368 NA non-coding upstream 19675 2428122 ~ 2428322 (+)
G51354 NA non-coding upstream 22714 2415700 ~ 2425283 (+)
G51272 NA non-coding upstream 46630 2401033 ~ 2401367 (+)
G51270 NA non-coding upstream 47103 2399778 ~ 2400894 (+)
G51358 NA non-coding upstream 79583 2368182 ~ 2368414 (+)
G51384 NA non-coding downstream 104383 2554739 ~ 2621187 (+)
G51394 NA non-coding downstream 181421 2631777 ~ 2633862 (+)
G51470 NA non-coding downstream 372606 2822962 ~ 2823706 (+)
G51388 NA non-coding downstream 390054 2840410 ~ 2844319 (+)
G51495 NA non-coding downstream 451118 2901474 ~ 2901723 (+)
G51274 NA other upstream 97511 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 546571 1897343 ~ 1919516 (+)
G51122 NA other upstream 766031 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1009642 1429873 ~ 1435328 (+)
G50920 NA other upstream 1677764 769841 ~ 770233 (+)
G51529 NA other downstream 611677 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 752416 3202207 ~ 3208984 (+)
G53388 NA other downstream 3071886 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3409946 5931718 ~ 5943899 (+)
G53651 NA other downstream 3795208 6245564 ~ 6248392 (+)

Expression


Co-expression Network