CI01000009_03164135_03169470 (GPR161)


Basic Information

Item Value
gene id CI01000009_03164135_03169470
gene name GPR161
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3162318 ~ 3170140 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03164135_03169470.mRNA
GTATAAAAACACTGAACTGTCAAAAGTTTTTCCTTTCTCATATTCAGCCGGCCACAATATTTCAATCTATGTTATGGAACTTAATTCATTTTTAAATTTCTCACTCAGACTAAGCAAATATAACATTTTGTTTAAATTTGTGTTAGTCATACATTTAGCCTATACACAGAATGTCAGCATCCGAGCAGTACTTCTTAACTACAGGGGACTTAAAATTATTTAGGAATTTGTATTCACTATAACTTCACCAAATTCCTGTAATTTCGCCCAATAATTTTATTTAATTTTTATTTACCTATTTGATGTGTTACTTATGCATTTCCAAAGAAGCGCAGTTTTGTTGACTCAAATATAGATAGATAGATAGATTGTTGTTGTTCTAAGCATTGCTGCTCTGTTAGTTTTAACATGTAGATATTTTTGTCGAAAACAGCCATAAACACTATTTGAGCAAATCAGTGAGAGTGAGACCCTCCGGACTGTCTGCCGTAGAGATGGAGGGAAGTTTTCAAGACGAGGGTTTCCGACGCCATTGTGACGTCATCAGCGCCTCTTTATTCACCGCCGACCGCAGCAGCCGCAACAAATGAACACCCCTGAATCGTTTGATACTTTGTAATTGCGTTGAAACTTCGAGCATGCGTCTCCGAAAAGCAATTTTGTTCCGCGAGGGCGTGAGAAAATCCAGCGTCTTGCAGGAGGTGATAAAGTTTTTGGATTAAAGTTAGCCGCCGCTCACTAACAAAGCCAGCCGGAGAAAGTTACCAGCACTGCACTATAGCGGGATATCGCCTGGCCTGGAGAGCTGGTACGTTATCTATGTATCTATAATTTCATTAGGATAAACTATGCACTTTGAATCTAAAGAATCAGGAGCATGTTTTTGTGCAATGCAAAATATCGATGTTGTTGGAAATTTGAGAAAGAAATCTGCTTGCGCTGCACTCTCTCCGCTAACTGATCACATTACATTGCTGTGCTGTGGTTGTACATTGAATGGGCATCATGGTGAACGATTTATTGAAGAAGCATGACAGATCCACATGCAGTGGCCCGACACGCATTAGGATACTAAAGTCACACTTAAACTGTAAACAATTGAAACATATTATATTTGTTATGGTTTGATATTTTGTTATCTAATGCAGTGATATGTGCATTGTTCAACCTTTTTTTTAATTTATTTTTTTATTTATTTTTTTATTTGATGTTGTTGTCGTCATTGTTTTTTATGTAATGAATTTTGATTATCTTAAATCTTAATATCGTAAACTTATTATCTTTAGTCAGCCGTTTACATTAAGCCTGATAACAATATGTAAAGCTTGCATATATTTTGTGTACATATAGTTGAATAAATGTGATGGTCTCTGAATTCTTCACAGCGCAGCATATTGTAAACTTGTGATTTTTAGTCAACCGTCTGCAGTAAACCTGCTAACCTGATGTAAAAGTTGCATATTCTGCATATTTTGTGTGACTCTTATGTTTCATTCACATCCTGTGATTCTAGATTGATAGGAGTCTTATTTATACTTCAAATCTGAGATCAAATGGTCTCTGAATCCTTCACAGCACAGCTCAGTTCTTAACAAACAGCACATTGTGAGAATGTGTGTAATCCACATTTGTACAATGTTTTGTACAATTGAAATCAGCTTGCTTTGTAATACTTTACACAGTACACCCTTGAATTAACCCACCACACCAGATTATTTCTCAAGTTCCAGACAGCTTTAACCAGACAGCTTTTTCTCTCTTATGTTGTAGTTTGTCAACATGTCTGTCCAGTCCTGGGTAGTCAGCAGCCTCCCATAATGAACAACTCTAAGAATGGGACAGCGGTGGCCAATTCCACTAATGGCCTGGACGACGGTGGGCTTATGGTCTTGGAGTCTGTCTCTATCATCATCATAGCCATATTGGCATGTCTGGGAAATCTGGTCATTGTGGTGACGCTATATAAGAAGCCCTACTTATTGACACCCAGTAACAAGTTTGTCTTCAGCCTGACTTTGTCCAATTTGCTGCTGTCTGTATTAACGCTGCCCTTCGTTGCGGCCAGCTCGGTGCATCGGGATTGGATGTTTGGGGTGGTGTGGTGCAACTTCACAGCACTCCTCCATCTACTTGTCAGCTCGTCTAGCATGCTTACACTGGGAGCCATTGCCATTGACAGGTACTATGCCGTATTATATCCCATGATCTACCCCATGAAAATCACGGGAAACCGAGCTGTGCTTGCCATTGTTTACGTGTGGCTCCACTCCCTGGTCGGATGCCTGCCGCCGCTTTTCGGTTGGTCCGCTTTCGAGTTTGACCGCTTCAAGTGGACCTGCACGGTGGCTTGGCACAAGGAGATAAGTTATACCACCTTCTGGGTTACGTGGTGCTTCCTTCTGCCACTGATGGCCATGCTGGTCTGCTATGGCGTCATCTTTCGCGTGGCCCGCATCAAAGCTCGCAAGGTTTACTGCGGTAGCGTGGTGGTGTCTCAGGAGGAGTCCAGCTCTCAGAAGAACGGCCGCAAGAACTCCAGTACATCCACGTCTTCTAGTTGTAGCCGCAGGAGCCTGATCTACTCTGGGAGTCAATGCAAGGCGTTTGTCACCATTCTGGTGGTGCTGGGGACGTTTTTGACAACTTGGGCTCCGTATGTGGTAGTTATAAGCACCGAAGCACTGTGGGGTAAATACAGTGTTTCTCCACAGATGGAGACGCTAGTCTCCTGGCTTTCCTTTACCAGTGCCGTGTGTCATCCACTTATTTATGGGCTGTGGAACAAGACCGTACGTAAGGAGCTGTTGGGCATGTGCTACGGCGACCGCTACTACAGAGAGTCTTTTGTTATACGGCACCGGACCTCTCGTCTCTTTAGCATCTCTAACCGGATAACGGATCTGGGGATGTCTCCTCACCTGACGGCCATGTTAGTGGGTGGTGGGCAGCTCCTGAGCCGTGGTAGCAGCACAGGAGACACTGGCTTCAGCTTTACACAAGACTCAGCTACAGACGTCATGCTGTCGGACAGCTACACCTCAGAGTCCTCCCACTCAGCCCTCTGTGCTGCCAATAAGAGAAGAAGTTCTGTCACGTTTGAGGACCAAGTGGATCAGATTCCTAAAGGTGACCCCTCAATAGAACAAGTGACAGCAGACATCCATAACTCTTTGGACAGCTTTGCGTCCTCTCTGGCTAAAGCTATAGAGAATGATGCCAAGCTACAACTCTTTGGGGAATGGACTCAAATTCCCACAAGTCTGTTTACAGTACGAAACACACAGAGAGCTCCCCGTTACCTGGATGGACAGAGACTCAGGATGGAAAGCATCGATGAAGGAATAGTTAAAGATGATGATGATGAGCAGGAGGAGGAGGAGGAGCATGAGGAAAAAATAGGTGACACTTCCATGTAGTTCTCTGACGTGAACTTTGGTGAACTTCTTAAAGGACCAGAATCTTGTTTAATCTTTAGCTTTGAAAGGTACAGAACATTCAGCTAACACATTGGCAGAGGTTTACAAATGTACAGTTGTTTGTGTAATTTACATTCTAGGTAACGAACTTATACTTGATTATTTTAGCCAGCAACTGCTGCTACTTGCCTTGGTGAGACCAAAGACCAATAATCATTGCTGTACCTGCAAGGTATCAGGTACTAGAAGCCCTACCGTCACTCACCAGAATAAGTTATGTTTTTGTAACATAGAAGATATTGTAAAATCATGTACAGCCCTCATATTGTGAGGTATTTTGGCTGTTTTGGGTACTGTGTATGTATTATGTTTACTCTTTTCTTACAAGGAAACTGTAACCACTCTTTTATATGTACTGACGGTTTGTAAGAATGATTATCCTAGAGAAAGGCTCCTCTTTTCAAGTTTGTTTAATATATTCATTCAATTATATATTTTTTTAAGTGCCACAATGTTTAAAGAAAATATAACCCCCAAATATTTGGGGGGGTTATATTGATGTGGACAAAAAAAAAAAAAACTCTTTTCAGGCCCTACACCTTAAAGTATTTTTTCAGGCATTGAATTGACATTGAAGAATCATCTAAAGGACAGAAAGATACTGGGCATA

Function

symbol description
gpr161 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning. Predicted to be located in cilium. Predicted to be active in recycling endosome.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08439 GPR161; G protein-coupled receptor 161

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03164135_03169470.mRNA True 4086 mRNA 0.42 5 3162318 3170140

Neighbor

gene id symbol gene type direction distance location
CI01000009_03145417_03159851 F5 coding upstream 2404 3145417 ~ 3159914 (+)
CI01000009_03123137_03137452 CCDC80 coding upstream 24007 3122116 ~ 3138311 (+)
CI01000009_02918681_02973307 KDM6A coding upstream 188366 2918681 ~ 2973952 (+)
CI01000009_02799246_02827589 NA coding upstream 334678 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 448320 2712958 ~ 2713998 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 32067 3202207 ~ 3208984 (+)
CI01000009_03211734_03220047 NXPE3 coding downstream 41594 3211734 ~ 3222297 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding downstream 106432 3276572 ~ 3284006 (+)
CI01000009_03301176_03305406 LAMP1 coding downstream 131036 3301176 ~ 3305595 (+)
CI01000009_03313112_03329470 MED14 coding downstream 142972 3313112 ~ 3329510 (+)
G51610 NA non-coding upstream 12886 3119464 ~ 3149432 (+)
G51559 NA non-coding upstream 43298 3118793 ~ 3119020 (+)
G51558 NA non-coding upstream 43962 3117858 ~ 3118356 (+)
G51552 NA non-coding upstream 53406 3108463 ~ 3108912 (+)
G51553 NA non-coding upstream 54307 3107726 ~ 3108011 (+)
G51589 NA non-coding downstream 52619 3222759 ~ 3223865 (+)
G51581 NA non-coding downstream 91057 3261197 ~ 3262009 (+)
G51585 NA non-coding downstream 92196 3262336 ~ 3262959 (+)
G51569 NA non-coding downstream 117188 3287328 ~ 3290810 (+)
G51529 NA other upstream 99731 3062033 ~ 3062587 (+)
G51274 NA other upstream 811832 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1260892 1897343 ~ 1919516 (+)
G51122 NA other upstream 1480352 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1723963 1429873 ~ 1435328 (+)
G53388 NA other downstream 2352102 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2690162 5931718 ~ 5943899 (+)
G53651 NA other downstream 3075424 6245564 ~ 6248392 (+)
G56100 NA other downstream 5959160 9129300 ~ 9130286 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location