CI01000009_03211734_03220047 (NXPE3)


Basic Information

Item Value
gene id CI01000009_03211734_03220047
gene name NXPE3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3211734 ~ 3222297 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03211734_03220047.mRNA
ATGGAGAAATACTTTCCCAGATATGTCCCTTTCTTTACTCTGCTGGCACTGTTAGGATTCCTATTCCTGCTTTGGAATATCACCTCGTTGGAAAGCTGGAACTGTCAGACAGTGTCTTCTTTTTATCAGCTTCAAAACAGCATCCAGTCAGTCTTGAAGACCTCTGAATTTTTTCTGCCTGTGGAGTTCAACTACTCATTCTGCGCCCACCTCGGCCAGGAGCCCTCTGGAGAGGAAGCCAGGGAGGAGAGCTATATTCTCAAATCCATCGCCTGGCCAGAGCCATCGATCCTAGGACTGCCGTTGCGTCAAAGTACTGATCCTGCACAGAGCTATTACAGTATCCAAGACCCTGGAGAGCTGCAGATTGGTGGGCAGCTGGTAGTGAAAGTACAGATGCACAACTTTTTGGGCCAGCCCAAAAAACACGGAGGAGACTTCCTAGTAGCGCGACTTCACACACCAGAGCTGGCGGCAGGTGTGGCGGGGCAGGTACACGACCACAACAATGGAAACTACACTGTATTTTTCCCACTGCTATGGGCAGGTGTTGTGCAGGTGGAGCTGATCATGATTCACTCCAGCGAGGCCGTGATGGTCCTCAGGCGACTGAGAGAGGAGCAATCAGACCGGGTGTTCTTCAAGAGCCTCTTCCGCTCAGGGTACCTCTCTGAGACAACTTTGTGTAATTTGTGCCTGCCGGTCAAACAGCAGCCGCTTTGCAACTACACAGACCCACAGACCGGAGAACCCTGGTTCTGTTATAAGCCCAAGATGTTGGACTGTGATACACGGATCAACCACTCAAAAGGGGGGTATAAGAAACACCTTCTCACTGTTTATGAGTCGCAGTTCTTCCAAAGTGGAATAAATATCAAAATCCCAATACATCCTGCAGGGGTGGAAAATGTGACTGTTTTACCTGCTTCTAAAGTACGAATCAAAGGGATGCACCTTAAATTCACTCCTTCCGGGTACTACTACCAGGGATCATGGAGGCCATTGAGTGGTGTCGTTATGCGTCAGTTTAATGGCTCTTCAGTCATAACCCAGTGTCTTAGAGGGAAAATGCTGTACATGTATGGAGACTCCACTGTGCGACAGTGGTACGAGTATCTCATTGCCCATGTTCCAGAGTTTAAAGAGTTCAACTTTCATAGCCCGAAGAATGTTGGCCCGTACATGGCTGTCGACAGCAACCACAACATACTGTTGAGATACCGCTGCCACGGGCCACCAATCCGCTTCACGTCCGTGTCCTCGGCTGAGATGCACTATATCTCAAATGAGCTGGACCGCTTACGAGGGGGCTCGGATACGGTGGTCATGATTAGCATCTGGTCACATTTCAGCACTTTCCCAGTGCAGGTGTACATACGACGCTTGCGCCACATTCGCAGGGCGGTGATCCGACTGCTGAACCGAGAACCAGCGACTTTGATCCTGATCCGCACGGCCAATCTCCAGAAACTGGACCCGGAGTCCAGCTTGTTCAACAGCGACTGGTTCTCTCAACAGCTTGACGCAGTGCTCCGAGCCATGTTTAAAGGTCTGAACATCCAGCTGGTGGACGCCTGGGAGATGACACTGGCCCACCACCACCCTCATCAGCTACACCCTCCACCTGACATTATATCAAATATGGTTAACTTCATCCTTTCCCACATCTGCCCGCTGACATGTTGGCCATATGTGGACATGTTGGCCATATGTGGTCATGTGATGTTTGGAATTTGACAAGTGTGAAAGAGCATACAGGTATGACAAGGGGTGTCTGCAGAGATATAGATTATACTTTGTTGCTTATCTTGTACTATTTATTTTGTCCATCATGCCTTTGATAAGTATTAATATAATTTATTCCATTCTGCATTTACCTCTGAATGATCCAAAAATGTATATACAGTATCTCACAGAAATTTGTAAATATTTTGTTATATATTTTCATGTGACAACACTGAAGAAATGACACTTTGCTACAATGTAAAGTAGTGAGTGTACAGCTTGTATAACAGTGTAAATTTGCTGTCCCCTCAAAATAACTCAACACACAGCCATTAATGTCTAAACCACTGGCCACAAAAGTGAGTACACCCCTAAGTGAAAATGTCCAAATTGGGCCCAATTAGCCATTTTCTCTCCCCGGTGTCATGTGACTCGTTAGTGTTACAAGGTCTCAGGTGTGAATGGGGAGCAGGTGTGTTAAATTTGGTGTTATCGCTCTCACTCTCTCATACTGGTCACTGGAAGTTCAACATGGCACCTCATGGCAAAGAACTCTCTGAGGATCTGAAAAAAAGAATTGTTGCTCTACATAAAGATGGCGTAGGCTATAAGAAGATTGCCAAGACCCTGAAACTGAGCTGCAGCACGGTGGCCAAGACCATACAGCGGTTTAACAGGACAGGTTCCACTCAGAACAAGAGGACTCCAGTGGCAACCTGTGAAGCTCTGGTGAACTCCATGCCCAAGAGGGTTAAGGCAGTACTGGAAAATAATGGTGGCCACACAAAATATTGACACTTTGGGCCCAATTTGGACATTTTCACTTAGGGGTGTACTCACTTTTGTGGCCAGTGGTTTAGACATTAATGGCTGTGTACTGAGTTATTTTGAGGGGACAGCTAATTTATACGGTGATACAAGCTGCACACTCAGTACTTTACATTGTAGCAAAGTGTCATTTCTTCATTGTTGTCACATGAAAAGATATAATAATATATTTACAAAAATGTCCCTCACATTTTTGTAAATATTTTATTATATCTTTTCATGTACTCACTTCTGTGAGATACTGTAGTTGTATCATGTTGTATGTTGTATTTCATGTATTCAAATGCAATGTAAAATACATTTATACTCCAAATATGATTATTCAGATTTTCTTGGAAGAGTCAGTTAATGTGCCTTATTTAGCACTTTTTTTGTGTGTGTTCATTTGTACTATTCCATTTTTATGTGGTTTACAGCTGGAAAATTGGGTCTCTGAGCTTACTA
>TU58773
TGAAAAGATATAATAATATATTTACAAAAATGTCCCTCACATTTTTGTAAATATTTTATTATATCTTTTCATGTACTCACTTCTGTGAGATACTGTAGTTGTATCATGTTGTATGTTGTATTTCATGTATTCAAATGCAATGTAAAATACATTTATACTCCAAATATGATTATTCAGATTTTCTTGGAAGAGTCAGTTAATGTGCCTTATTTAGCACTTTTTTTGTGTGTGTTCATTTGTACTATTCCATTTTTATGTGGTTTACAGCTGGAAAATTGGGTCTCTGAGCTTACTATTAAAGGGTGACGCATAACATGACAAGTCGGTATGAAACAGCGATTTTTTTTTTTTTTTTTTTTTTTTCCCTATTTATTATCTTTTTTCCCTATTATGATGTACAAGTAAAACAGCTTCACTAATGATAAAAAAAAGTAGGGCGGGACTTGATTTTGTCCATCTGTAATTGATTAGATTGATGTTATTTGCTATTGCTGTGATCTTATGCAAGTGACAGGTTGCTGGAGAGGACAGGTTATTTTCCCGCCCTTGTGCTGGTGAACACGTCATCAGAGATGTCATTGCGACATCTGAGAGAAAATTATTTTGTTTAAAGATTAAAGCTCTTAAAATTCCTCATCCATCATCCAGTGTTGATCATGACTCAAAAAAAAAAAAAATCCTTAAGCATCCATTTTTATTTTATTTTATTTTTTATGTTTACTCATGTGTAGAGGATAATCTCTCATCGTGCCTATTGAAAATAGTGGACTATTCTTAAAAATTGTTGGAAAACATTAGGGTTAAGAGTTTTAGGTTAGGGTTAAGTTAACTCTAACTGAAACTGACCTTAGCGGAAGTCTGAGAAAGAGGAAAAAAAATCTAACTGGCTATTTGAGAAATGAGAGTTGTACATGTGGATAAGAAATCTAAATTATTAAAAATGCATAAATTACTGTTGTAGTTTCATTTCCGTATTTCAATAACCTTGAGCTTATTTTGGTTAACAATTATATATTGGTAGTTATAAACTCATGTTTGATCCAGACATGAAAACTTACTATTTTCCAGACTTCCCCGTTTTCCGAGGACAGTCCAGGTTTTTTGGTGTCCTGTCACCAACTGGAGCTGTCCCAGCTTCACAGCACATTCAAAACACTGCAAAAAAGTCAAACATAGCTTGCTGGTTGAGAAGAGAGAAATCTTGTAGTGATTATTTTCACCAAAAGAGGGGGCTGCAAGCGACACAGATTACTACCCTTACTTAGCCTTGAAGTATGGAATCCCA

Function

symbol description
nxpe3 Predicted to be located in extracellular region. Orthologous to human NXPE3 (neurexophilin and PC-esterase domain family member 3).

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03211734_03220047.mRNA False 2997 mRNA 0.45 6 3211734 3221307
TU58773 True 1285 lncRNA 0.50 1 3221013 3222297

Neighbor

gene id symbol gene type direction distance location
CI01000009_03202999_03207060 MPC2, MPC2.S coding upstream 4306 3202207 ~ 3208984 (+)
CI01000009_03164135_03169470 GPR161 coding upstream 41594 3162318 ~ 3170140 (+)
CI01000009_03145417_03159851 F5 coding upstream 51820 3145417 ~ 3159914 (+)
CI01000009_03123137_03137452 CCDC80 coding upstream 73423 3122116 ~ 3138311 (+)
CI01000009_02918681_02973307 KDM6A coding upstream 237782 2918681 ~ 2973952 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding downstream 55265 3276572 ~ 3284006 (+)
CI01000009_03301176_03305406 LAMP1 coding downstream 79869 3301176 ~ 3305595 (+)
CI01000009_03313112_03329470 MED14 coding downstream 91805 3313112 ~ 3329510 (+)
CI01000009_03330968_03333405 NA coding downstream 109278 3330585 ~ 3333453 (+)
CI01000009_03335503_03355421 NA coding downstream 114196 3335503 ~ 3355426 (+)
G51610 NA non-coding upstream 62302 3119464 ~ 3149432 (+)
G51559 NA non-coding upstream 92714 3118793 ~ 3119020 (+)
G51558 NA non-coding upstream 93378 3117858 ~ 3118356 (+)
G51552 NA non-coding upstream 102822 3108463 ~ 3108912 (+)
G51553 NA non-coding upstream 103723 3107726 ~ 3108011 (+)
G51589 NA non-coding downstream 1452 3222759 ~ 3223865 (+)
G51581 NA non-coding downstream 39890 3261197 ~ 3262009 (+)
G51585 NA non-coding downstream 41029 3262336 ~ 3262959 (+)
G51569 NA non-coding downstream 66021 3287328 ~ 3290810 (+)
G51637 NA non-coding downstream 87219 3308526 ~ 3308759 (+)
G51529 NA other upstream 149147 3062033 ~ 3062587 (+)
G51274 NA other upstream 861248 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1310308 1897343 ~ 1919516 (+)
G51122 NA other upstream 1529768 1680146 ~ 1681966 (+)
G53388 NA other downstream 2300935 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2638995 5931718 ~ 5943899 (+)
G53651 NA other downstream 3024257 6245564 ~ 6248392 (+)
G56100 NA other downstream 5907993 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6632052 9853929 ~ 9856587 (+)

Expression


Co-expression Network