CI01000009_03276572_03283625 (POU2F1B, POU2F1)


Basic Information

Item Value
gene id CI01000009_03276572_03283625
gene name POU2F1B, POU2F1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3276572 ~ 3284006 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03276572_03283625.mRNA
TTGACTTTGACTCCAGCGCAGCAGCAGTTATTGCTGCAGCAGGCTCAGGCTCAGCTCCTGGCAGCAGCGGTGCAGCATTCAGCCGGCCAGCAGAGTAGCACTTCAGGAGCCAGCATCTCTGCCTCCGCTGCCACCCCCATCACCCTCTCTCAACCCATTCAGATCACACCTCAGTTACAGCAGCTGCAACAGCAGCAGAACCTCAACCTGCAGCAGTTTGTGCTGGTCCAGCCGGGCCACCCCATCGCAACACAGCTGCAGCCCGCGCAGTTTATCATCTCGCAGACACCACAGGGCCAGCAGAGTCTCCTGCAAGCCCAGAACCTTCTAACACAACTACCTCAAAGCCAAGCCAACCTCCTGCAGACCCAGCCAAGCATCACACTTGCCACACAGCCTGCGACACCCACACGCACGATAGCAGCGACCCCCATCCAATCCCTCGCTCACAGCCAGACGACACCAAAGCACATCGACACACCCAGCCTGGAGGAGCCCAGCGACCTGGAGGAGCTAGAGCAGTTTGCCAAGACCTTCAAACAGAGACGCATCAAACTGGGCTTCACGCAGGGGGATGTTGGCCTTGCCATGGGAAAACTTTATGGAAATGACTTCAGCCAAACCACCATTTCTCGCTTTGAGGCCTTGAACCTGAGCTTTAAAAACATGTGCAAACTGAAGCCTCTGCTTGAAAAATGGCTCAATGATGCAGAGAACCAGACGTCTGACCAGGCCCTGTCCAGTCCCAGCTCTCTTGGCTCGCCTGGGCTGGGCTTGGAGGGCCTGAACCGCCGCCGCAAGAAGAGGACCAGCATCGAGACCAACATCAGAGTGGCCTTAGAAAAGAGCTTTCTGGAGGGCGTTTCTTGTGCCTTTGCCCTTTTCAAGCAGAACCAAAAACCTACCTCTGAGGAGATCACCATGATCGCAGACCAGCTCAACATGGAGAAGGAGGTGATCCGAGTATGGTTCTGTAACCGCAGACAGAAAGAGAAGAGGATCAACCCGCCCAGCAGTGGCAGCATCGCCAGCACCCCTATCAAAGCAATCTTTCCACCCACCACACCTCTGTCACCAAGTACAGCCAGTCTTGTGACCAGTAACACACCGACTACTATGACTGTAAACCCAGTTATGTCTCTCACCAGCACTAGTGTCTCCAACGTCGGTTTCACTGGCACAACTATTGGCTCGGCTACTAACACTGCATCGGTCATCTCCACTGCACCTGTGGTCACCACCGCAGCATCCTCTCCTTCGCTCAGCCCTTCCCCCAGCGCAGTGCAGACGTCCTCCGCAGAGCAGGCTTCAGCTCAGGAGACGGTGACGGCAGTAAGTCAGGCACCTTCCTCTCTAGCGTCCACTTTGGGCACTGGGCAGGTGATGGTGGCGGCACCCAGCCTTTCGGCTGCTCTGCAAGGAGCCGCCCAGCTGCCTACCAGCGCCAGCATCGCTGCCATGGCTGCAGCCGCTGGCCTCAATCCTGGGCTCATGGCATCCTCACAGTTCACTCCTGGCGGAGCTCTTCTTAGTTTGGCACCAGGTGGTCTCGGAAGCGCTTTGAGTCCAGCACTGATGAGCAACAGCACCTTGGCCACAATCCAAGCTCTGGCATCTGGTGGCACTCTGCCCATTACATCTCTGGACGGGAGCGGGAACTTTCTGTTTGCCAACACCAGCGCTGGCAGTACCCCTAACCTCGTGACGGCACCGCTCTTTCTGAACCCTCAGAACTTGTCACTGCTTGCCAGTAACCCTGTCAGCCTAGTGTCTGCGGGAGGGGCTGCGGGTGCCGGAGCCCTTAACCTGCACATCACCGCCGATGCCCACCAGAGCGCTGTTACTACGGCAACTATGCCCGCCTCCACCATCACCACGGCCTCTAAGGCCCAGTGAAAGCTTAACCCACTCCTCTCCTCTTCTAGACCCCTTTCTTTAATCTCTTGCTACCACCAAAAACAAACCCACTAAAAAGGATTTAATGTTGTTTTAACGTTATTTTAATGTTTAAGTTTGTATGTTCTAACTTTACACATATCTTTTACACATTACTCCACGATGTTTGGACCTCCATTGACGGTTTGACTTCAAACAAATCAACAATAAGCGAATGTTAGCGTCACCACAGAGCTTGCATCAGGAGAGCAGAAACCTCCCTGGACATTGTGCCAAGTCTCTGTGTGATGCAAAAGCATATTCGTTTCAGCGAACTCACTCTTTCTCCCATTTTCACATGATACCTCTACTTCAGAGGTACTTCTGAAATGCTTTTAACCA

Function

symbol description
pou2f1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human POU2F1 (POU class 2 homeobox 1).
pou2f1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within negative regulation of transcription, DNA-templated. Located in endoplasmic reticulum and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03276572_03283625.mRNA True 2277 mRNA 0.54 11 3276572 3284006

Neighbor

gene id symbol gene type direction distance location
CI01000009_03211734_03220047 NXPE3 coding upstream 55265 3211734 ~ 3222297 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding upstream 69144 3202207 ~ 3208984 (+)
CI01000009_03164135_03169470 GPR161 coding upstream 106432 3162318 ~ 3170140 (+)
CI01000009_03145417_03159851 F5 coding upstream 116658 3145417 ~ 3159914 (+)
CI01000009_03123137_03137452 CCDC80 coding upstream 138261 3122116 ~ 3138311 (+)
CI01000009_03301176_03305406 LAMP1 coding downstream 17170 3301176 ~ 3305595 (+)
CI01000009_03313112_03329470 MED14 coding downstream 29106 3313112 ~ 3329510 (+)
CI01000009_03330968_03333405 NA coding downstream 46579 3330585 ~ 3333453 (+)
CI01000009_03335503_03355421 NA coding downstream 51497 3335503 ~ 3355426 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding downstream 182847 3466853 ~ 3473414 (+)
G51585 NA non-coding upstream 13613 3262336 ~ 3262959 (+)
G51581 NA non-coding upstream 14563 3261197 ~ 3262009 (+)
G51589 NA non-coding upstream 52707 3222759 ~ 3223865 (+)
G51610 NA non-coding upstream 127140 3119464 ~ 3149432 (+)
G51569 NA non-coding downstream 3322 3287328 ~ 3290810 (+)
G51637 NA non-coding downstream 24520 3308526 ~ 3308759 (+)
G51638 NA non-coding downstream 25072 3309078 ~ 3309537 (+)
G51639 NA non-coding downstream 26948 3310954 ~ 3311469 (+)
G51659 NA non-coding downstream 143560 3427566 ~ 3427773 (+)
G51529 NA other upstream 213985 3062033 ~ 3062587 (+)
G51274 NA other upstream 926086 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1375146 1897343 ~ 1919516 (+)
G51122 NA other upstream 1594606 1680146 ~ 1681966 (+)
G53388 NA other downstream 2238236 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2576296 5931718 ~ 5943899 (+)
G53651 NA other downstream 2961558 6245564 ~ 6248392 (+)
G56100 NA other downstream 5845294 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6569353 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014423 pou2f1b,LOC107748141 misc CM030128.1 CM030128.1 13655238 ~ 13689188 (+)