CI01000009_03301176_03305406 (LAMP1)


Basic Information

Item Value
gene id CI01000009_03301176_03305406
gene name LAMP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3301176 ~ 3305595 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03301176_03305406.mRNA
ATGATCCCCATCATCCGCAAACAAAACATGCCCACCGGGGCAATTTTTAGCCTGCTGTTAGCTCTAACTATACATCAGACTTTGACCACTGATGTATCGCCCACCGTGGTCGCCCCTGAAACCAGCTCTCCTCCGGCCTCTCCTGCAACCCCCGGCCCCCCTGAGCGGGGCAACTACAATGTCACCAACAGCACTGACACTTTGTGTCTCTTGGCACGGATGGGCCTGCAACTCAACATAAGCTTTACTTCAAGCTCTCATGGCAAGACTGTCCAGGAGGTCTTGAACCTGCATCCAAACCTGATTAAAGTCTCTGGATCCTGCACGCCAGACTTTGCAGCTCTCAAGCTGACTGAGGACAACATTACTCTGACTTTTAGCTTCTCTTTAAATTCCACATCAAACAAATATCATCTTAGTGGTTTGGAGCTGTCAGCTGCATTGCCCGATATGGCTAAGCGCCTTGTTGTCAGTAATACCACTCTGAACTACATGGTGGGAACACTGGGCCATTCTTACATGTGTCAGAAGGAGAAGACCTTGAGCGTTACACAGGATTTCTCTCTGAACACTTTCCAGCTTCAAGTGCAACCTTTCGGCGTCAATGGAGATTTTGGAGCAGCTGAGGAGTGTGAGTTGGATGAGGACGACATGTTGATTCCCATCATTGTGGGTGCTGCCTTGGCTGTTCTAGTGCTCATAGTGATCCTGGCCTACCTTATTGGCAGGAACAGAAGTCATGCAGGCTACCAGACCATCTAAACCCTCCTCATGTAATCTTTAAGCCAGGATGTGTCGACACCACCGATTTCTGTTCTAATCTGGACTCAACAACACTACTACAACTGCAGCAGCCTAGTTTTTAACCTGCCCTGCCCTCTGCTGGTGTCACACTGCCACTGCTCAGGTGGATCTGGACTTTCTGTTGGATTATGTTAAACACATAGTATA

Function

symbol description
lamp1 Enables enzyme binding activity. Involved in several processes, including Golgi to lysosome transport; granzyme-mediated programmed cell death signaling pathway; and positive regulation of natural killer cell degranulation. Located in several cellular components, including cytolytic granule membrane; late endosome; and perinuclear region of cytoplasm. Colocalizes with lysosome.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06528 LAMP1_2, CD107; lysosomal-associated membrane protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03301176_03305406.mRNA True 951 mRNA 0.49 6 3301176 3305595

Neighbor

gene id symbol gene type direction distance location
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding upstream 17170 3276572 ~ 3284006 (+)
CI01000009_03211734_03220047 NXPE3 coding upstream 79869 3211734 ~ 3222297 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding upstream 93748 3202207 ~ 3208984 (+)
CI01000009_03164135_03169470 GPR161 coding upstream 131036 3162318 ~ 3170140 (+)
CI01000009_03145417_03159851 F5 coding upstream 141262 3145417 ~ 3159914 (+)
CI01000009_03313112_03329470 MED14 coding downstream 7517 3313112 ~ 3329510 (+)
CI01000009_03330968_03333405 NA coding downstream 24990 3330585 ~ 3333453 (+)
CI01000009_03335503_03355421 NA coding downstream 29908 3335503 ~ 3355426 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding downstream 161258 3466853 ~ 3473414 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 345289 3650884 ~ 3661357 (+)
G51569 NA non-coding upstream 10366 3287328 ~ 3290810 (+)
G51585 NA non-coding upstream 38217 3262336 ~ 3262959 (+)
G51581 NA non-coding upstream 39167 3261197 ~ 3262009 (+)
G51589 NA non-coding upstream 77311 3222759 ~ 3223865 (+)
G51637 NA non-coding downstream 2931 3308526 ~ 3308759 (+)
G51638 NA non-coding downstream 3483 3309078 ~ 3309537 (+)
G51639 NA non-coding downstream 5359 3310954 ~ 3311469 (+)
G51659 NA non-coding downstream 121971 3427566 ~ 3427773 (+)
G51673 NA non-coding downstream 289709 3595304 ~ 3599012 (+)
G51529 NA other upstream 238589 3062033 ~ 3062587 (+)
G51274 NA other upstream 950690 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1399750 1897343 ~ 1919516 (+)
G51122 NA other upstream 1619210 1680146 ~ 1681966 (+)
G53388 NA other downstream 2216647 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2554707 5931718 ~ 5943899 (+)
G53651 NA other downstream 2939969 6245564 ~ 6248392 (+)
G56100 NA other downstream 5823705 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6547764 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037288 lamp1b coding NC_007120.7 CM002893.2 34380299 ~ 34389875 (+)