CI01000009_03330968_03333405


Basic Information

Item Value
gene id CI01000009_03330968_03333405
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3330585 ~ 3333453 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03330968_03333405.mRNA
ATATAAAAACGAGAAGCATTAAAAGCATATGAATTGAAAATACACAACGTTGAAGTAAAAAAAAAAAAGGTTAGCCCCAGTCCCACCCATTCCGACACTTGTACATTTAAATGGCCATTCTAGTGACTTCACTCTATTTTTACGGCAGGTAGTTCAATGTAGATTCACAGAACGCCGGTACGTTTTGGTGGGTTCTCGTCGTTTTGACCACGCCTTTTATTAATATCTTATGCCGCTGCTTGAATGAACACCATGGAGAGGAGGACCGCTGAAATGCCCCTTTGCATGGAGAGTGACAAACGCCATTAATGGATAAATAAACAAATAAATTCCGTATTAATCATATAAATCCGTGTCACTGGTGGGATAATTACGGACCGACAATGGCAGCTGTGAGTCTGACAGATCCGCTTTGCAAACCTTGTTCTTACCGTTCACATTTCAAAGTTGAGTTGTGCGTGAGGAAGCCCTTGATGCCCATTCACCTGAGCAGTGATCAAGTGGCACTGGAGATGCTGTGTCTCTGCAGCCAGCTGGATCTGTTGATCAGAGCTCAGGTCCATCAGGAATATTTGGATGTTATAGGACTATCTGCTGTATTCCCTCGAGTGGAAGTTTATATGATACACGGCAGCCCTATTGACATGCTGGAAAAATCGCCTTCAGATGCTTATTTTCCTTTTATTGGGAGGCTGAACCAGCTGCTGGTGCTTAGTCAGCAGCAAGTGCTAAACTCTTTTAAAGACAGCTTTCCATTATCCATCATAAGAAAGGATATTGAGGCCAATTTCAAACAGTTAAAGATGTCTCTTTCAAAAGAGGATGGGTCCAAGCTGGATCCTCAGTTGCCAGCACATCAAGTGAGCTGGGTGTCAGAGTTAACACAAAATATGATATCTACGGTACTGTCACTCTCAGAAGAGCTCACCAAAGAGTTAAATCCCCTCAAGGAATCTGTCTCTAACGTCTCCTAACAGCTGGATCCACAGTGCCTCAAGTGGATGCCGAGAAATTGTCACCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03330968_03333405.mRNA True 1022 mRNA 0.43 6 3330585 3333453

Neighbor

gene id symbol gene type direction distance location
CI01000009_03313112_03329470 MED14 coding upstream 1075 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 24990 3301176 ~ 3305595 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding upstream 46579 3276572 ~ 3284006 (+)
CI01000009_03211734_03220047 NXPE3 coding upstream 109278 3211734 ~ 3222297 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding upstream 123157 3202207 ~ 3208984 (+)
CI01000009_03335503_03355421 NA coding downstream 2050 3335503 ~ 3355426 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding downstream 133400 3466853 ~ 3473414 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 317431 3650884 ~ 3661357 (+)
CI01000009_03680266_03685634 NA coding downstream 346813 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 355877 3689330 ~ 3697470 (+)
G51639 NA non-coding upstream 19116 3310954 ~ 3311469 (+)
G51638 NA non-coding upstream 21048 3309078 ~ 3309537 (+)
G51637 NA non-coding upstream 21826 3308526 ~ 3308759 (+)
G51569 NA non-coding upstream 39775 3287328 ~ 3290810 (+)
G51585 NA non-coding upstream 67626 3262336 ~ 3262959 (+)
G51659 NA non-coding downstream 94113 3427566 ~ 3427773 (+)
G51673 NA non-coding downstream 261851 3595304 ~ 3599012 (+)
G51734 NA non-coding downstream 276782 3610235 ~ 3610474 (+)
G51735 NA non-coding downstream 277027 3610480 ~ 3610852 (+)
G51736 NA non-coding downstream 277625 3611078 ~ 3611277 (+)
G51529 NA other upstream 267998 3062033 ~ 3062587 (+)
G51274 NA other upstream 980099 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1429159 1897343 ~ 1919516 (+)
G51122 NA other upstream 1648619 1680146 ~ 1681966 (+)
G53388 NA other downstream 2188789 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2526849 5931718 ~ 5943899 (+)
G53651 NA other downstream 2912111 6245564 ~ 6248392 (+)
G56100 NA other downstream 5795847 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6519906 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 misc NC_056707.1 CM032076.1 16916761 ~ 16919290 (+)
mexican tetra (Astyanax mexicanus) G77919 sptbn5 non-coding NC_035905.1 CM008308.1 3430165 ~ 3431406 (-)