CI01000009_03335503_03355421


Basic Information

Item Value
gene id CI01000009_03335503_03355421
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3335503 ~ 3355426 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03335503_03355421.mRNA
AGAGAACTCAGTAGTCGACGTCTCTTCCTGTGCATCGTTGCATCACGTCTCAAGTGAGAGAAATGAAAACAGACAGAAGACTGTGAGAGGAAAGAGGAAAGCGCGGGAATGCTCTGAAAATGCCAAGCGAAAGCATTCAAAGAGCAGTAATGGCAGCCTGGGCAGAGCAGAGAATGAACAGCTCAAAAATGGAGATGTGGAAGCCGTCACCCTGTTTGAGGTGGTCAGCATGGGCAGGAGCGCCATGCAGTGGTTTAGTTTTTGTGGCTTGTGTCTAATAAATATTATAGTTCAGGATGTGAATGCTATGTGTGTTCTTGTAGGGATGGTCACAGCAGAGATGTTTCAGAGCAAACAGGGTACTGATGTCATGAGTAAAATGGTGGAAGATCTGGATGAGGACACAGGTTTACAATATAAGAAGTTCCTTGCATTTCCGTGGATTTTAACTGTCACATGGCCTCTTGACATGGACAGTGGTGAGTATCCCCTCATCATGTCCGGCCTGTACTGGAAGAGGTTTCGTTCACACTTCTGTGAGTTTGTATCGGTGCTAGTGGCCCAGTGTCAGAACTCTGTAATCTTTGATGGCTACCTCTTGAACACACTCATTTCACTGCTGACAGAGCTCTCAGATTCCAGAGTTCGCGCTTTCAGGCACACCTGTACGCTAGCAGCAGTGAAGCTGCTTAGCGCTTTGGTGAATGTGGCTCTCAACCTCAGTGTCAGTGTCGATAACAGTCAGCGGCTGTATGAGGTCGAGCTGGCTAAGGTGGCCAGCAAACGGGCTTCTCAGAGGCTGGACAGGATCCAGAGAAAGATCAGTGAGTTACAGGACAGGAAATTTGAAATTGAGAACATGATGGATGCCATTTTCAAAGGAGTCTTCCTGAAGAGATACAGAGACGTGATTCCTGAAATCAGGGCCATCTGTATGGAGGAACTGATGGTATGGATGAAGCTGTATAGTTCAGTGTTTCTGAACGACAGCTACCTGAAGTATGTGGGATGGATGATGCATGACAAGCAACCTGATGTGCGTCTGAAATGTGTGCTGGGTCTACAGGGACTTTATCAGGACCAAAGTAGTTCCAAAATGGACCTTTTCACGATACGGTTTAAGGAGAGGATGATCTCTATGACGCTGGATAAAGACCATGAAGTGGCCATACAGGCCGTGAGATTGCTCATGGTCATCTCCCAATCCTGTGAGGATGTTCTGAGTCCTGATGACCACAAGAACATCTTCCAGTTTGTGTACTGCTCTCACAGACCTCTAGCTATCACTGCGGGTGAATTCCTCTACAATAGGCTGCTAAGTAACCCTGAATTATCAAGGCCCAGAGAAGGAGCCTCCAATCAGGATAGACACAGAGAGTTAGTCTTAGCCAGAGTCCAAGCCCTCATCCACTTCCACACTGAGAGCGAGCTGCACCAGCATGTGCTGTACCTCGTGGATAGTCTGTGGGACAGTGCAGGAGCTCTGCTGAAGGACTGGTCCGGTCTTACCTCACTGCTCTTACCTCACATGTCCTCTCTGAGCAGTGCTGAGGAGGCCTTTGTGATTGAGCTCATGTTGGCGTCAGTGAGGCAGGCTGCAGAGGGTCCACCTTTGTCAGGGAGAGGAGCAGGTAAAAAGGTGATAAATACTAAAGAGAAAAAGTTACAAACCGATGTCTGCGCTAAACTCACTGAACACTTCATTAAAGTGCTACCTGAGCTGTTATCTAAGTACTCAGAGGATGCTGAAAAACTGACCTCTTTCCTAAGAATACCTCAGTTTTTCCAAACGGACTCCTGTGATCTTGAAAACTCACAGGCGTTGCTGGCTGAGTTGGAGGCTGTGGTGGACAGACACACAGACACGGGGCTTCTGGAGATGGCTGCTCGTTCTTACCAGAGCCTCTGTGCTCAGGATTCGCCATGGCACCCCCTGGCCCGACCCACCTTTGACCGGCTCATCCAGCACTGGACAAACACACTGGAAACATGGTTAGGAGAATCACTAAGTGTGACAATTGAGGCTCTGCGCTGTATGTGTAGCTGCATTCTGTGGAAGCTCAACACCTTTGGAGAAGGTGTGACCTCCAGGGAGTCCGCCCTCCAGCAGAGAAACCAGCTACGTGCGTTCTGTGAGAAATGTCACCGCTGTCTCTCTCACGCAGAGCAGCTTGTACGAGAGCAAGCCTTCATGTGTCTGAGTGACGTTCTCATAGCTCATAATTACCAGCTTCAGATGTGGGATTCGTCTGCAGGCACTCCATTGCTGTACACCCCTGATCCCAAACTCCAGAAAGCTCTCCTTTCCTTCGTCCTGGAGCATGTCTTCACCAGCCCTGAGCTGGATACCCACAGCAGTAAAGGTTCTCTTCTCTTTTCATTCACAGTAAATCATAAGGGTCCTTGTTTGGCCTGTGCTCTGTTGTGGGCTGACATGTGGGTGGCCTCAACAGATCCAGCTTTGCCTTTTAGGTCAGATTTTTTCAGTGAGAGTGAGTGTGGAGAGGGACGGCTGGAAGACTTGCACCGGCGGAGAAATCTTCTGGCAGCATACTGCAAGCTGATAGTGCACAGTGTGCTAGAGATGAGCATGGCTGCTGAGGTTTTCAAGCAGTATGTGAAGTACTACAATGACTTCGGCGACATCATCAAAGAGACCCTGAACAGGACACGGCAGATGGACAAGATCGAAAGCGCACGCACACTGGTGCAGTGCCTTCAGCAGCTGTATCTGAGGCTGAAACAGGAGCAGGACAGAGGAAACACATGCAGCTCCCGGGTTCAGACCTACAGCAGCATCAAGGAGCTGGCCAGACGCTTCTCGCTCACTTTCGGATGGGACCAGATCAAATCCCGTGAATCCCTGGCCATGATCCACAGGGACGGCATTGAGTTTGTTTTCAAAGGATTCGTTCAGCAGTCTGAGAAACATTCTCCACCGTACATCTCATACCTCACCATCCTCAGCGAATTCTCTGGCAAACTGCTCAAACCGGACAAGAAGACTATCTACAGTTATTTGCAGAAGTTTGCTGGTGAGCAGGTCATCAACAACAGAGAGGAGAGCTGGATGCCGCTGATCTACTACAGAGCATCTCTGATGGGCACAGCTGAGGGAGAAGATGCCACCTCCTTCATCAGCTCTGACACCAACAAACAGCCCTCCCTCAGCAACCGCTCCAGATCACCCTCCATGAAACAAGTCAACTCTGAAGGGGACCAAAGGTTTATTTCACCCTCTACAGAATCAAAAGCAAACAAGCTTTTGAAAAGGTGAGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03335503_03355421.mRNA True 3282 mRNA 0.49 26 3335503 3355426

Neighbor

gene id symbol gene type direction distance location
CI01000009_03330968_03333405 NA coding upstream 2050 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 5993 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 29908 3301176 ~ 3305595 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding upstream 51497 3276572 ~ 3284006 (+)
CI01000009_03211734_03220047 NXPE3 coding upstream 114196 3211734 ~ 3222297 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding downstream 111427 3466853 ~ 3473414 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 295458 3650884 ~ 3661357 (+)
CI01000009_03680266_03685634 NA coding downstream 324840 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 333904 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 367984 3723410 ~ 3727389 (+)
G51639 NA non-coding upstream 24034 3310954 ~ 3311469 (+)
G51638 NA non-coding upstream 25966 3309078 ~ 3309537 (+)
G51637 NA non-coding upstream 26744 3308526 ~ 3308759 (+)
G51569 NA non-coding upstream 44693 3287328 ~ 3290810 (+)
G51585 NA non-coding upstream 72544 3262336 ~ 3262959 (+)
G51659 NA non-coding downstream 72140 3427566 ~ 3427773 (+)
G51673 NA non-coding downstream 239878 3595304 ~ 3599012 (+)
G51734 NA non-coding downstream 254809 3610235 ~ 3610474 (+)
G51735 NA non-coding downstream 255054 3610480 ~ 3610852 (+)
G51736 NA non-coding downstream 255652 3611078 ~ 3611277 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 126519 3202207 ~ 3208984 (+)
G51529 NA other upstream 272916 3062033 ~ 3062587 (+)
G51274 NA other upstream 985017 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1434077 1897343 ~ 1919516 (+)
G51122 NA other upstream 1653537 1680146 ~ 1681966 (+)
G53388 NA other downstream 2166816 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2504876 5931718 ~ 5943899 (+)
G53651 NA other downstream 2890138 6245564 ~ 6248392 (+)
G56100 NA other downstream 5773874 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6497933 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location