CI01000009_09277694_09278311 (CRYGM5)


Basic Information

Item Value
gene id CI01000009_09277694_09278311
gene name CRYGM5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9277694 ~ 9278510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09277694_09278311.mRNA
CAGATCATATTCTATGAGGACAGAAACTTCCATGGCCGTAACCATGAGAGCAGTGGGGACTGCCCTGATGTGACCTCATACCTGAGCCGCTGCAGCTCCTGTAGGGTGGAAAGGGGCTGCTTCATGGTCTATGAACACTCCGACTTTATGGGTCACCAGATTTTGGTGAGAAGAGGAGATTATCCTGATAACCAGAGGCTCATGGGTATGAGCATGAGCGACTGCATTAGATCTTGCAGAATGATCCCTATGCATAAAGGAACGTTTAGAATGAGAATCTTTGAAAGGGAGAACTTTGTCGGACAAAAGTATGAGCTGATGGATGACTGCGAGTCAATCCAGGAACGCTTTCACATGTCTGACTGCCAGTCCTGCAATGTCACACATGGCCACTGGCTGCTGTATGAACGGCCCAATTTTGAAGGCAGAATGATATACATCAGGCCAGGGGAGTACAGCAGCTTTAATAATATGGGTCTAGGCACAGTGAAAATTGGTTCCATCAGACGCATCATGGAGTCCTGTTAAAGGAAATTACACTTGCTTTAGGTGATGAAAGACAACAAATGATTTCCATATAGTTTCCCAACAAGAAATGCTGTGACACTAATGTGCCTAGGATTTATAATGTCAAAGATCACTTGTTTTTGCAGAGAATGTATGATAAAACCAGCTTTTGCTGGTGGAAGCTGCACTTTCAAATGTTGATTTACATGCATCTAAATCA

Function

symbol description
crygm5 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

NR:

description
gamma M8e crystallin

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09277694_09278311.mRNA True 727 mRNA 0.44 2 9277694 9278510

Neighbor

gene id symbol gene type direction distance location
CI01000009_09274252_09275727 CRYGM3 coding upstream 1930 9274252 ~ 9275764 (+)
CI01000009_09212210_09214607 NA coding upstream 62408 9211931 ~ 9215286 (+)
CI01000009_08955749_09012630 NEB coding upstream 264611 8954503 ~ 9013083 (+)
CI01000009_08940709_08944557 ARL5A.S, ARL5A, ARL5B coding upstream 333137 8940443 ~ 8944557 (+)
CI01000009_08899091_08928547 NA coding upstream 348843 8897170 ~ 8928851 (+)
CI01000009_09283776_09284378 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 4906 9283416 ~ 9284393 (+)
CI01000009_09288599_09289209 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2D13, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 10089 9288599 ~ 9289224 (+)
CI01000009_09291857_09292464 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 13347 9291857 ~ 9292464 (+)
CI01000009_09299572_09300272 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2D13, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRGM2, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 20813 9299323 ~ 9300291 (+)
CI01000009_09305528_09308381 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2D13, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 25355 9303865 ~ 9308396 (+)
G56183 NA non-coding upstream 17637 9259321 ~ 9260057 (+)
G56175 NA non-coding upstream 29323 9246729 ~ 9248371 (+)
G56172 NA non-coding upstream 33964 9238654 ~ 9243730 (+)
G56171 NA non-coding upstream 42918 9234543 ~ 9234776 (+)
G56170 NA non-coding upstream 44813 9232581 ~ 9232881 (+)
G56220 NA non-coding downstream 84805 9363315 ~ 9363544 (+)
G56225 NA non-coding downstream 101075 9379585 ~ 9379794 (+)
G56204 NA non-coding downstream 203584 9482094 ~ 9483970 (+)
G56242 NA non-coding downstream 208089 9486599 ~ 9486808 (+)
G56243 NA non-coding downstream 209675 9488185 ~ 9488544 (+)
G56100 NA other upstream 147408 9129300 ~ 9130286 (+)
G53651 NA other upstream 3029302 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 3344893 5931718 ~ 5943899 (+)
G53388 NA other upstream 3738640 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 6068710 3202207 ~ 3208984 (+)
CI01000009_09853929_09854476 SAP18 other downstream 574849 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 2482276 11761606 ~ 11766944 (+)
G57811 NA other downstream 2655432 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 3154048 12432538 ~ 12436017 (+)
G57682 NA other downstream 3546959 12825469 ~ 12892339 (+)

Expression


Co-expression Network