CI01000009_09967529_09989449 (TBX15)


Basic Information

Item Value
gene id CI01000009_09967529_09989449
gene name TBX15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9967384 ~ 9989467 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09967529_09989449.mRNA
GCATAAATTAGACTTGGGTTTGGATTACCGTCGTCAGCGGAGACCTAAATCCACCCGATATAAACATTTTGCGCGTGCGGCATTCCTGCGCCTGCCGCCCGGACGGAGTTTCTATTTGTCCTCCGTTGGATTTGCAGTGGGAGAGATGAGTGACAGGAGACGATCCGCTGCAGCGCTGAGTTCACGAGCGCACGCCTTTTCGGTTGAAGCCCTGATCGGGACAAACAAGAAGCGGAAGCTCCGGGGCTGGGAAGAAAAGGAACTGGAGCTGTCTATGGAGAGCCTCGCGAGCAACGGACAATTGGGAGACGGCGAGGACCCTGCTAATTGTCTGGATATTGATCCGGATTCGGAGGCCAGTCCGGGCTCTGACGGCGAGGGTCTGGCGGAGAGGACGTCCTGCTCGTTCGGCTCCCCGGCGGACCTGACCCCTGCCGCCTGCGACCCTTCACCCTCAGCCTCTATGGAGGAGATCCAGGTGGAGCTGCAGTGCGCTGACCTTTGGAAACGCTTCCACGACATTGGTACAGAAATGATTATCACAAAAGCAGGAAGGAGAATGTTCCCTGCTATGAGAGTTAAAATCGTTGGACTGGATCCACATCAGCAGTATTACATTGCCATGGACATTGTACCAGTGGACAACAAGAGATACAGGTATGTGTATCACAGCTCAAAGTGGATGGTGGCGGGAAACGCAGATTCCCCAGTGCCACCCAGAGTTTATATCCACCCGGATTCACTGGCTTCAGGAGACACCTGGATGAGACAAGTGGTCAGCTTTGACAAACTCAAGCTCACCAACAATGAGCTGGATGATCAAGGCCATTGCGTCTTTTCTCACTGTTGCGACTGTGTTGTGCCTGGCTCTGGTCTGTGGCATTGTCCTGAGGCAGCCCCAGGCAATATTCTCAATCCTGAATATCTCCGATCTGTGGAATTACAGCAGTGTGCTTTGAACACTTCCTCTATGCAGTCGGTCTTCATTGAGCTGGTGTTGTCTGGCCTTGGGCAGCATCGGGCTCTCCTGGGCTGTGCATTTGGATTGGATAGGAATGGGGGAGCTGGAATATTAAATTTACTGTCATCAAGCTGTTTTGCAAAGGCCTCTCTTCTCTTGCCTGACCTCCTCGGTTGCGGTGGACCCAGGAGACGCACACTGACACTGGGAATCATCCTGCACTCGATGCACAAGTATCAGCCCCGTGTCCACGTGATCCGGAAAGACTTCAGCAGCGAGCTTTCTCCAACTAAACCTGTTCCTACTGGGGAAGGAGTTAAGACATTCAGCTTCCCAGAGACTGTGTTCACTACGGTCACAGCCTACCAGAACCAACAGATTACCCGTCTAAAGATCGACCGCAACCCATTTGCCAAAGGATTCCGGGACTCAGGGAGAAACAGGACTGGGTTGGAGGCAATAATGGAGACGTATGCTTTCTGGAGACCTCCAGTGAGGACGCTGACATTTGAGGACTTTACGAACATGCAGAAACAGCAAGGAGGGAGCACTGGCACCTCTCCCACTACCTCCAGCACTGGCACTCCATCTCCCTCCGGTGCGACACACCTTCTCTCCCCTTCCTGTTCCCCTCCTACTTTCCATCTGGCACCCAACACCTTCAATGTGGGCTGCAGGGAGAGCCAGCTATGTAACCTGGGCTTGTCCGAGTACCCCGCATGTGCTAGAAGCAACATGGCCGCCCTGCAGGGCTACGGAGGACTGGCTGACGGCTCCTACGGCCGCCTCCAGACCACAGGAGGCACTGTAACCTCCACCCAGGCCTCCGATTCCTTCTTGCCTCAGAGGACTTCCTCTCTCATCGCTGCAGGAATGCAGGGAGGGGCTCATGCCTCATTGGCTGCTGGTAACGGCAGCGGTGGCAGCGGCGGGGGTAAGATGGATGCGTATGGAAGTCAGCTGGCCTCTTTTCCCGCATCCCAGCTGCAGTACGTCATGCAGGCAGGGGCGAGCTCCGCCTCTGGGTCATCAGCTTCATCCGGCTCATCCTCGTCCTCCGCCCATATGTTCTCTGGGAGCCATCATCACGTGCAGCAGAGCACATACAATGCTTTTTCCCTTCACAATCCCTACAACCTGTACGGATACAACTTCCCGGCATCACCGCGCCTGGCTGCCAGCCCAGAGAAGCCTCAGGGTGGTTTACTGTGCTCTTCCTCCTCTGCTGGAGCATTTGCTGAACGCCAATACCTGTCCAACAGCGGCATGGACAGTATGCACATGATCGGCAACCCCGCCGGCAGCCAACAGGGGGCCAGCAGCTGTGACGGCCGCCAGTATGGCTCCTCTTCACAGATGTCCATGCACATGGTTTGAAGCGCTTGGAAAAGTAAA

Function

symbol description
tbx15 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including cephalic musculature; head mesenchyme; mesenchyme pectoral fin; mesoderm pectoral fin bud; and pharyngeal arch 1. Orthologous to human TBX15 (T-box transcription factor 15).

NR:

description
Tbx15 protein

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10182 TBX15, TBX14; T-box protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09967529_09989449.mRNA True 2356 mRNA 0.55 10 9967384 9989467

Neighbor

gene id symbol gene type direction distance location
CI01000009_09952526_09962840 WARS2 coding upstream 3105 9952526 ~ 9964279 (+)
CI01000009_09878612_09881564 POPDC2 coding upstream 85490 9878612 ~ 9881894 (+)
CI01000009_09866000_09866290 NA coding upstream 100990 9865723 ~ 9867040 (+)
CI01000009_09853929_09854476 SAP18 coding upstream 112882 9853929 ~ 9856587 (+)
CI01000009_09783235_09785477 IL17D coding upstream 181821 9783235 ~ 9785563 (+)
CI01000009_10103558_10119209 GDAP2 coding downstream 114091 10103558 ~ 10119220 (+)
CI01000009_10268535_10269640 NA coding downstream 279068 10268535 ~ 10269784 (+)
CI01000009_10319216_10329706 PLCD4B coding downstream 329749 10319216 ~ 10329836 (+)
CI01000009_10338738_10339712 BCS1L coding downstream 349271 10338738 ~ 10339774 (+)
CI01000009_10341830_10347798 CYP27A1.2, CYP27A1.4, CYP27A7 coding downstream 352363 10341830 ~ 10348005 (+)
G56417 NA non-coding upstream 50211 9916869 ~ 9917173 (+)
G56386 NA non-coding upstream 52990 9908693 ~ 9914394 (+)
G56384 NA non-coding upstream 60608 9899687 ~ 9906776 (+)
G56412 NA non-coding upstream 69139 9897727 ~ 9898245 (+)
G56411 NA non-coding upstream 69929 9892833 ~ 9897455 (+)
G56439 NA non-coding downstream 30639 10020106 ~ 10020343 (+)
G56349 NA non-coding downstream 62583 10052050 ~ 10135429 (+)
G56456 NA non-coding downstream 68807 10058274 ~ 10058532 (+)
G56392 NA non-coding downstream 269061 10258528 ~ 10259660 (+)
G56507 NA non-coding downstream 293606 10283073 ~ 10284524 (+)
G56100 NA other upstream 837098 9129300 ~ 9130286 (+)
G53651 NA other upstream 3718992 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4034583 5931718 ~ 5943899 (+)
G53388 NA other upstream 4428330 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1771319 11761606 ~ 11766944 (+)
G57811 NA other downstream 1944475 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2443091 12432538 ~ 12436017 (+)
G57682 NA other downstream 2836002 12825469 ~ 12892339 (+)
G57691 NA other downstream 2916977 12906444 ~ 12918465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014535 tbx15,LOC107712261,LOC107724509 coding CM030128.1 CM030128.1 16583824 ~ 16611661 (+)