CI01000009_10319216_10329706 (PLCD4B)


Basic Information

Item Value
gene id CI01000009_10319216_10329706
gene name PLCD4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10319216 ~ 10329836 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_10319216_10329706.mRNA
AAATTATTTATGCTGTAAATTTTTTTGCTGTAATTTTAACAAGAGCAGAAAACAGAACTATTGCACCTAATAAGGCAGAGGAAAAAAAGGAAAAGTGGGAGTGTCTAGGAAGGAATGAGGCAGAGGAAGGAGGCTGGCTATGCATCACTGTGAAAGCAGCCTGGACTGCGGCTTTGTTTTCCCAGCCTTGCACACACAGCAGCAAAGACACAGAGCCCATCCTCCTCATCGGATGTTTATATATCAGACGTGATGTGGAGGCTGTTCGTGAGGGACATCAGTCGGAGACCCTTCTCACTGTAGCAGATGAGTTTCCTGCTGACCGCTGCTTCACACTGGTGTTCCGTGGCCGCAGAGGAAACCTGGATCTGATGGCAGATAAGTCTGAGTCAGGAACCTTGGAAGGTCAGGAGTTTGTGGAGTTCTATAGGATGCTCACTGAGAGAAAAGAGGTGCTGGAGTTATTCCAGGACTATTCCAGTGATGGACAGAGCTTGTCTCAGTGTGATCTGGAGGAGTTCCTGAGGGAGGAGCAGCTAGAGGGGGAAGGCAGTTATGAACATGCCCTTCAGCTGATTGATCGCTATGAGCCTTCAAACACGGCCAGAATGAATCATTTGATGACAATCGATGGGTTCCTAATGTACCTGACGTCTCCTGAGGGATCCATCTTCAATCCAGAGTGGCAGGGCCTCTTTCAAGACATGAGCCAACCTCTCGCCCACTATTACATCTCGTCCTCACACAATACTTACCTCATGGAGGACCAGCTAAAAGGACCAAGCAGTGTTGAAGCCTACATCCAGGCTCTGAAGCGAGGCTGCAGGTGTGTAGAGGTGGACTGCTGGAATGGAGCGAATGGGGAGCCGGTAGTTTACCATGGACACACATTCACATCTAAGATTCTCCTCAAAGACGTGATTACTACTATTGCCAATTATGCCTTCAAGGCATCTGACTATCCACTCATCGTGTCCATTGAAAACCACTGCAGCATAGAGCAACAGGAAGTCATGGCTCGATATTTCAGAGATATCCTGGGCGATATGCTGCTGACGAGCACATTAGACGGTGGAGTGGCCAGTGAACTCCCATCCCCAGAGGCACTTAAGAGGAAAATCCTGTTAAAAGGGAAGAAGATTGGAAATGAACCAGAGAGCTTCACAGGTGAAGTTAGTGATGAGGACGAGGCAGCAGAAATGAATAAGGACAGTCTGGAATCAGAGAGTCCACCAACAGATGCAAAGAAATCGAAGCAAAATCTATGCAAGGAGCTCTCAGACCTTATGTTCTGTAAGAGCGTACATTTCCACAGCTTTGAGCATTCCCGCACCTCTGCTAAGCCTGATGAGATGTCTTCATTCTCTGAGTCTAAAGCCCGTAAATATTCCAAGGAAGCAGGTTCAGATTTTGTTCTGCACAACACAAGGCAGCTAACAAGAGTGTATCCAAGTGGAATGAGGACGGATTCATCAAATTACTGTCCACTGGACATGTGGAACATGGGATGCCAGATTGTGGCATTAAACTTCCAGACAGCAGGAATGGAAATGGATCTTAATGATGGGCTATTTACTCAGAATGGCCGCAGTGGCTATGTACTAAAACCTGAGATACTACGCAACAGAGAAAGATTCTTTGATCCTGAAAAACCAGAGGAACGTGAGGATTACCACCCTTTACTCTTCTCTGTTAAGGTTATTAGTGGACAACAGCTCCCTAAAGTAAAGCAAAAAGAATGGTCCATTGTAGACCCCCTGGTAAGAGTGGAAATTTATGGCGTTCCTCTGGATCAAGCCAAACAGGAGACCAAATACATTGACAACAATGGATTCAACCCATGTTGGAACGAATCCTTGCGGTTCACAATCCACACCCCTGAGCTGGCACTGGTGCGTTTTGTAGTTGAAGACTATGATAAAGCATCTAGGAATGACTTCATAGGGCAATACACTCTTCCTTTTACCTGTATTCAACCAGGATATCGCCATGTGCATCTGTTGTCCAAAGACGGAATGAGTATCCATCCATCCTCCATCTATGTTCAGATCAAAATCACAGAGCTGTGATTTCACAATTCTAGTTTTATTTACAACGCTTGAAACTTGTTCTGAAGAGCTAATATTTCTCAGACAAATCTGTAGATTTTAAGAGTACCTCTGTAGCAGTTGCATGGTGTTAGTAGTGCCTTCTCAAAGA

Function

symbol description
plcd4b Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within several processes, including acrosome reaction; intracellular signal transduction; and phosphatidylinositol metabolic process. Predicted to be located in endoplasmic reticulum and nucleus. Orthologous to human PLCD4 (phospholipase C delta 4).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_10319216_10329706.mRNA True 2199 mRNA 0.46 13 10319216 10329836

Neighbor

gene id symbol gene type direction distance location
CI01000009_10268535_10269640 NA coding upstream 49432 10268535 ~ 10269784 (+)
CI01000009_10103558_10119209 GDAP2 coding upstream 199996 10103558 ~ 10119220 (+)
CI01000009_09967529_09989449 TBX15 coding upstream 329749 9967384 ~ 9989467 (+)
CI01000009_09952526_09962840 WARS2 coding upstream 354937 9952526 ~ 9964279 (+)
CI01000009_09878612_09881564 POPDC2 coding upstream 437322 9878612 ~ 9881894 (+)
CI01000009_10338738_10339712 BCS1L coding downstream 8902 10338738 ~ 10339774 (+)
CI01000009_10341830_10347798 CYP27A1.2, CYP27A1.4, CYP27A7 coding downstream 11994 10341830 ~ 10348005 (+)
CI01000009_10361969_10374788 MCM3AP coding downstream 32133 10361969 ~ 10375458 (+)
CI01000009_10376105_10382009 LSS coding downstream 46269 10376105 ~ 10382284 (+)
CI01000009_10382813_10390177 LMLN coding downstream 52977 10382813 ~ 10390827 (+)
G56393 NA non-coding upstream 14731 10303482 ~ 10304485 (+)
G56540 NA non-coding upstream 26657 10290459 ~ 10292559 (+)
G56509 NA non-coding upstream 29704 10288850 ~ 10289512 (+)
G56507 NA non-coding upstream 34692 10283073 ~ 10284524 (+)
G56392 NA non-coding upstream 59556 10258528 ~ 10259660 (+)
G56564 NA non-coding downstream 23093 10352929 ~ 10353684 (+)
G56579 NA non-coding downstream 182577 10512413 ~ 10512640 (+)
G56567 NA non-coding downstream 188980 10518816 ~ 10533725 (+)
G56548 NA non-coding downstream 301262 10631098 ~ 10638452 (+)
G56594 NA non-coding downstream 365890 10695726 ~ 10696013 (+)
CI01000009_09853929_09854476 SAP18 other upstream 462629 9853929 ~ 9856587 (+)
G56100 NA other upstream 1188930 9129300 ~ 9130286 (+)
G53651 NA other upstream 4070824 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4386415 5931718 ~ 5943899 (+)
G53388 NA other upstream 4780162 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1430950 11761606 ~ 11766944 (+)
G57811 NA other downstream 1604106 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2102722 12432538 ~ 12436017 (+)
G57682 NA other downstream 2495633 12825469 ~ 12892339 (+)
G57691 NA other downstream 2576608 12906444 ~ 12918465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037335 plcd4b coding NC_007120.7 CM002893.2 38369872 ~ 38390990 (+)