CI01000009_11761868_11765848 (ORMDL1.S, ORMDL1)


Basic Information

Item Value
gene id CI01000009_11761868_11765848
gene name ORMDL1.S, ORMDL1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11761606 ~ 11766944 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_11761868_11765848.mRNA
ATATATATACAAAAGCAAGTGACGTGCTGAGTAGAAACCAAGATGAGTGAAATGATTTTAGTGAGAAAACTTGAGATAAGATAAACGACTGAACAAATACACTGTATATTAGGCAACATTGAACTTTGACTTTCGAACAGCTGCCTAAACTGTTTACTGTGACGGATAAACCAAACATGCCATAAAATGTCAATTCTACTTTCTTTGCTCTTTCAAAGAAGAATTGAACTGTTGCGAATTATTTGAATACGTGTTAGACAGCATGAACAGTAATGCATTAGGACAAAATACTATGAAGAATCACCCCATTAAAAGCAAGATGAACGTCGGTGTGGCCCACAGTGAAGTCAACCCAAACACCCGTGTGATGAACAGTCGGGGGATATGGCTGACATATGCACTCGGCGTAGGAATGCTTCACATTGTACTGTTAAGCATTCCCTTCTTCAGTGTTCCTGTTGTGTGGACCCTCACAAATGTTATTCACAATTTTGGTATGTATGTGTTTATGCATGCAGTGAAAGGCACACCATTTGAAACTCCAGACCAGGGCAAGGCAAGACTTCTCACACACTGGGAACAGCTGGACTACGGCGTGCAGTTCACATCATCTAGAAAATTCTTTACAATCTCACCAATCATTTTATATTTTCTCGCCAGCTTTTACACAAAATACGACACAGCACATTTTGTGATAAACACAGCTTCGCTTTTGAGTGTCCTCATCCCAAAACTGCCACAACTCCATGGAGTCAGGATCTTTGGAATAAACAAGTATTAAAGCCCAGTATTAAGAGGGCACAGACCAACTCGGAGCTGTTGCCTGATATGGAAGAGGAGATAACCCTTTGTACTTTGTACCGCAGTTGTGTACACTTCGCAGTTTTGTACAGTCTGTAATTGTGAGTCTCTTCGTTTGATATATCTTGAGAAATTGTTGTAGGGATATGTTAGGAGGAGGACAATTCCACAAGCATTAATAACTTAAGATATTTAATGTATTTTTGTTAGTAGTTGTGTGATCCTTGTGGATCTGGGCTGGCCCAGGTTTCATGGTTAAAGATTTTTTTGTTTGTTTGTTAATTAGTTTTTGTTCAAACACTTGTACAACACTGACACACTAAGATAATGCTTTTAGCGTCACTTCACATTTCCGAATACATTCTTAAATAATGCCATTTGTTTTTAAAATCGTTTGAAAGCCATGAAACCTTTCTGCTATTTCTTCAGTTTTGTTGATGTTATCATTGCTTCAGAGAGACGA

Function

symbol description
ormdl1 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL1 (ORMDL sphingolipid biosynthesis regulator 1).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_11761868_11765848.mRNA False 1264 mRNA 0.38 4 11761606 11766331

Neighbor

gene id symbol gene type direction distance location
CI01000009_11711277_11714191 MSTN, GDF-8, MSTNB coding upstream 46912 11711160 ~ 11714694 (+)
CI01000009_11669960_11702667 HIBCH coding upstream 58067 11669960 ~ 11703539 (+)
CI01000009_11493236_11526914 VWC2L coding upstream 234692 11493236 ~ 11526914 (+)
CI01000009_11434018_11455253 NA coding upstream 305971 11433792 ~ 11455635 (+)
CI01000009_11342784_11347580 NA coding upstream 412779 11342784 ~ 11348827 (+)
CI01000009_11769442_11773619 OSGEPL1 coding downstream 3111 11769442 ~ 11773619 (+)
CI01000009_11789703_11791511 NA coding downstream 23372 11789703 ~ 11791736 (+)
CI01000009_11803818_11808988 SLC40A1 coding downstream 36053 11802384 ~ 11809235 (+)
CI01000009_11835682_11873220 STAT4 coding downstream 69351 11835682 ~ 11873330 (+)
CI01000009_11875722_11882183 STAT1B, STAT1 coding downstream 109155 11875486 ~ 11882921 (+)
G57772 NA non-coding upstream 3943 11746377 ~ 11757663 (+)
G57665 NA non-coding upstream 95281 11664022 ~ 11666325 (+)
G57654 NA non-coding upstream 106242 11620460 ~ 11655364 (+)
G57606 NA non-coding upstream 228826 11530797 ~ 11532780 (+)
G57626 NA non-coding upstream 248402 11512902 ~ 11513204 (+)
G57786 NA non-coding downstream 11508 11777839 ~ 11778105 (+)
G57787 NA non-coding downstream 13998 11780329 ~ 11780567 (+)
G57789 NA non-coding downstream 20573 11786904 ~ 11787326 (+)
G57790 NA non-coding downstream 21245 11787576 ~ 11787784 (+)
G57719 NA non-coding downstream 48738 11815069 ~ 11822531 (+)
CI01000009_09853929_09854476 SAP18 other upstream 1905019 9853929 ~ 9856587 (+)
G56100 NA other upstream 2631320 9129300 ~ 9130286 (+)
G53651 NA other upstream 5513214 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 5828805 5931718 ~ 5943899 (+)
G53388 NA other upstream 6222552 5522242 ~ 5540638 (+)
G57811 NA other downstream 167611 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 666227 12432538 ~ 12436017 (+)
G57682 NA other downstream 1059138 12825469 ~ 12892339 (+)
G57691 NA other downstream 1140113 12906444 ~ 12918465 (+)
G57701 NA other downstream 1240312 13006643 ~ 13023138 (+)

Expression


Co-expression Network