CI01000009_12432736_12435509


Basic Information

Item Value
gene id CI01000009_12432736_12435509
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12432538 ~ 12436017 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_12432736_12435509.mRNA
GAATAAATGCAACGTACAGATAGAAATCGAAAGTAAAGTCTGTCTACGGTATTTATTAAGTCAATACAAGGTTGTGGCGTAAACCTGTTGTAGAAAATGAATAAAGTCATTTTGAATAACAAACCTAAGCTCATCAAATGGCTTAGTGTGGATTTAATGCATATTTTGCAACATGTTCAAGCTAAAGAACTTATAACAATGCCGGAGTACGATGAACTGAAGTCTGTGACAGTTCCCAGAGATAGGGTTGTTAAACTTTTGGACATCATCCTTGGAAAAGGTGAAAATGTGTGTCGAGATTTTCTGATTTTGCTGAAAGATGATGATGTGAATGAAATTTCTCCTGAACTCAGAAATTGGATCAAAACCGTGGACACTTCAGGCAAAATCTCTGCATCTGATTGCAGCAATGTGAATTCACCTATCATAACTGGTGCAACTCTAGGCTCCTTTACAATGAACGTGACTAATGCACCCTCAGGCAAATCAAATGTGCCTGCAAATTGCCAGAAACCTGATAGAGACTGGGAAGGAAGAGAAAATGGTAACAGGCCAATACAAGATTATCAAAAGCTTCTAAAAGCAAACACCAGTCATTTGGTTCAAAACGTGAAGAACATTGATGCAATTATTGATGATCTTAAGTTCTTGCACAAAGAATCAATTGCAAATGTGAGAGCGAAACCAACACGGCAGAAGATGATGAGGGAACTGCTTGACTGTGTGAACTGTAAAAGCTCTGCTAAGGAACTGGTCGATGCTTTGTTCAACCATGAACCAGATCTCATGAAGGATTTGCAATACTAAAGGTTGTATGGTTTATGCACCAGTTTAACAGCAAATATTACAGGGAAGCAATGGCATTATGTACCTTTTTTTTATTTTTATTTTTTTTATGTTTTTAATAATTGATTGGTGATGGAGTTTTACTTTTTTTGTATTGAGAACCAAGTTTTTTTTTTTTTACAAACAAGAGTACATATAACCAAACTTGGCATATAAATGATATATGGTATTGGTATCTATTAGGTTGCTTCTTTTTTTCCCCCTTTTTTTAAAAACTGATATCTGTGATGGTGTATATGGATGTGTATGTCCATATGTATAGTATTTTTTAATATTTTTAGATGTACCAGTCGATGTTGGAATGCTGGTTTTGAGTCTACTCCAAATTTTCCTACTAGGGACA
>TU65746
TAGAAATCGAAAGTAAAGTCTGTCTACGGTATTTATTAAGTCAATACAAGGTTGTGGCGTAAACCTGTTGTAGAAAATGAATAAAGTCATTTTGAATAACAAACCTAAGCTCATCAAATGGCTTAGTGTGGATTTAATGCATATTTTGCAACATGTTCAAGCTAAAGAACTTATAACAATGCCGGAGTACGATGAACTGAAGTCTGTGACAGTTCCCAGAGATAGGGTTGTTAAACTTTTGGACATCATCCTTGGAAAAGGTGAAAATGTGTGTCGAGATTTTCTGATTTTGCTGAAAGATGATGATGTGAATGAAATTTCTCCTGAACTCAGAAATTGGATCAAAACCGTGGACACTTCAGGTATGTTTCTTTGCAAAATACAACGTGCACATATAATTGTGCACTTATCATTTATGATTTAATATCGCTTAAAAACCAGTTCATAAAGTGAAACTAGTGGCCCATTTTTGCTGAAGGGTGTCCAAATACTAGCAACCAAATAGTCTTTTTCATAAGATAGGGTTT
>TU65740
GCAAAATCTCTGCATCTGATTGCAGCAATGTGAATTCACCTATCATAACTGGTGCAACTCTAGGCTCCTTTACAATGAACGTGACTAATGCACCCTCAGGCAAATCAAATGTGCCTGCAAATTGCCAGAAACCTGATAGAGACTGGGAAGGAAGAGAAAATGGTAACAGGCCAATACAAGATTATCAAAAGCTTCTAAAAGCAAACACCAGTCATTTGGTTCAAAACGTGAAGAACATTGATGCAATTATTGATGATCTTAAGTTCTTGCACAAAGAATCAATTGCAAATGTGAGAGCGAAACCAACACGGCAGAAGATGATGAGGGAACTGCTTGACTGTGTGAACTGTAAAAGCTCTGCTAAGGAACTGGTCGATGCTTTGTTCAACCATGAACCAGATCTCATGAAGGATTTGCAATACTAAAGGTTGTATGGTTTATGCACCAGTTTAACAGCAAATATTACAGGGAAGCAATGGCATTATGTACCTTTTTTTTATTTTTATTTTTTTTATGTTTTTAATAATTGATTGGTGATGGAGTTTTACTTTTTTTGTATTGAGAACCAAGTTTTTTTTTTTTTACAAACAAGAGTACATATAACCAAACTTGGCATATAAATGATATATGGTATTGGTATCTATTAGGTTGCTTCTTTTTTTCCCCCTTTTTTTAAAAACTGATATCTGTGATGGTGTATATGGATGTGTATGTCCATATGTATAGTATTTTTTAATATTTTTAGATGTACCAGTCGATGTTGGAATGCTGGTTTTGAGTCTACTCCAAATTTTCCTACTAGGGACAATAAAGTATATTTCATTTCATTCATATTGTACATAATATAATAATAATGATTGGTCAGTGATTGAACCATTGCATGCTGAATACTACTATCCTCTGTGAACTAAAATAAATGATGTTGTCTTAACA

Function

NR:

description
hypothetical protein Z043_124266

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_12432736_12435509.mRNA False 1189 mRNA 0.35 4 12432538 12435891
TU65746 False 527 TUCP 0.35 1 12432558 12433084
TU65740 True 933 TUCP 0.34 3 12434664 12436017

Neighbor

gene id symbol gene type direction distance location
CI01000009_12387605_12388405 LRRC3 coding upstream 41873 12385222 ~ 12390665 (+)
CI01000009_12351325_12366549 PCBP3 coding upstream 65941 12351325 ~ 12366597 (+)
CI01000009_12249416_12290497 COL18A1 coding upstream 141940 12248963 ~ 12290598 (+)
CI01000009_12198114_12221988 NA coding upstream 210545 12196699 ~ 12221993 (+)
CI01000009_12130688_12146560 CTDS1, CTDSP1 coding upstream 285596 12130688 ~ 12146942 (+)
CI01000009_12504532_12504815 NA coding downstream 68489 12504380 ~ 12504894 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding downstream 210593 12646484 ~ 12653857 (+)
CI01000009_12854692_12859028 NA coding downstream 418302 12854193 ~ 12861031 (+)
CI01000009_13194613_13197758 NA coding downstream 758546 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 956415 13392306 ~ 13476807 (+)
G57871 NA non-coding upstream 31486 12400478 ~ 12401052 (+)
G57704 NA non-coding upstream 60364 12305639 ~ 12372174 (+)
G57733 NA non-coding upstream 82258 12326123 ~ 12350280 (+)
G57850 NA non-coding upstream 243718 12188545 ~ 12188820 (+)
G57890 NA non-coding downstream 18895 12454786 ~ 12455080 (+)
G57896 NA non-coding downstream 26655 12462546 ~ 12462952 (+)
G57900 NA non-coding downstream 34391 12470282 ~ 12470604 (+)
G57903 NA non-coding downstream 38044 12473935 ~ 12474530 (+)
G57911 NA non-coding downstream 45853 12481744 ~ 12482032 (+)
G57811 NA other upstream 497287 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 665594 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2575951 9853929 ~ 9856587 (+)
G56100 NA other upstream 3302252 9129300 ~ 9130286 (+)
G53651 NA other upstream 6184146 6245564 ~ 6248392 (+)
G57682 NA other downstream 389578 12825469 ~ 12892339 (+)
G57691 NA other downstream 470553 12906444 ~ 12918465 (+)
G57701 NA other downstream 570752 13006643 ~ 13023138 (+)
G58028 NA other downstream 704487 13140378 ~ 13143608 (+)
G58382 NA other downstream 1597668 14039757 ~ 14039901 (+)

Expression


Co-expression Network