CI01000009_12854692_12859028


Basic Information

Item Value
gene id CI01000009_12854692_12859028
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12854193 ~ 12861031 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_12854692_12859028.mRNA
ATATAAATACATTGGTAAACCATTTGCTGAAACTTCAGAAAACAAATGGGAGGAACGGGAAAGCTGTGTGTTCCACTCAGTGGATAAGATCTGCTTGCTCTTGTATGGCACATTGATTTATTTTGGTAGACCATCACTGTAGTCTAAAGATGTGATTTAAACAGCAGCCATTTCTGTCCCCCTCGCCAGGAGTTTGCAATGGTATCATGTCTCCAGAAGGGAAGCTCATGTGTCACCAACGAACAGCTGCGGCCTTCTAAATTCAAGTTTGGGAAACTTAGAACTGTCACTCTGTTCTTTTCCTTTAGTAAAGCAAGGAGGTGTTTTTCATACACATGATACTAACTAAATTTACTACAACTACAAATTGTTTTTAGGAGGAGAAAAGTGTCAAAATTTTGGAATAGAGGAGCTAAAATGTGGGATGGGACAACCAAGAATGTTGGTCTGGACTCTGGAGCAGAGGGCCCCTGCAGTGACTCATTACATAGGACACAAAATGAAGGCTTCTACTAGGCCCTATGATTCCTGTCTGTGTTGCTGGGTTTTATGTCAAAATAAGGTCATTACAGGGTTGTACCACCTGGGCAAAGCATTTGGTGATGGGGGTGACATAAATGGCAGCTGCATCGACAAAGACAATCACTTCAGAGGGGTCATAATTGCTCCAGAAAACAGACGATTCTTTCAGTTTGCATTCATGGGTCAAATATTCCAGTTTAGGGTCCTTCCGTTTGGCCTGGTTCTGGCACCAGGAGTTTTTTCAAAGTTTGGCCAGGTGACATTGGATGTTGCCATAACTGGACGACTGGCTTGTCTGTGCAGCATTACCCCAACAAGTAATAGATCAAGCTCGTCACTTGTTGGACTATATTGCGGCTTTATGCAAGCTTGTCCCAATGCAGTCAACCAGTTTCATAGGTCTTGCTCTCAACTCTGTCAAGATGCTGGCTTTTCCAGCTCCAGAGAGAATATTGTCTATTCTGAGGACTGTAAAGCACCTTCGGGTTGGCCATTCTCAGCACTACATTTCTCTCATGAAACTCTTGGAGAAGCTCACAGCAGCAACGACAGTAGTATTTGGACTGTTGTGGCTCAGGCCATTCCAACAATGGCTTATTTAAAAGCATCTGTGTCCAGTACGAGACAAATACACAAAGAGAGTCACACATCGTTGTATGCAAGCTCAAGCACCTTGGTCACGGAAGCAGTTTCTCCTCAGAGGAGTTCAATTGGGACCTCCACCTGCACAGTGGGAGGTCATCAGGACAGATGTCAGTCTTCTCAGATGGGGGAGGCACGAGGTCATGGAGTGCACTTCAGTCTTGCTCACGACCTGCTTTGTTTGGGTTTAGATCAACCTGATTTCCAACTGGGCAGCATATCTACCAGGTCGACTCAATCAGACTGTGGATGCACTTTCACGCGGCAGGGTGTCGCAGGGAAATTGGACTCTACACCCAGAGGTTGTGCAGAGGATATAGAGGACAGCATGGGACTGCAGCAGGAGATGTCTTCACGCAAAGTGAAACATCTCACTACCCAAGTTGGTCCCGAGGGACGAACCAGAATCGCTGGGTTTGGATGCACTAGCTCTCTCAGACCAGACCTATTGAGTAAGAAGGAAAAGTTTGGCACACACATCCAGACTGACTGAATCTGTGGGTGTGGCCCCTGGGCCCACCGGGCCTCTCTTGGAGTGCTCACAGAGGGCCAGGTACACTGTTTTGAATGCTCGTGCTGCATCTACACAAATGTTGTACGCTTGTAAGTGGAAAGTGTTTTGTGACTGGTGCTCTAGCTGCGATGTTGATCCATTATCAGTGGGATGCAGCAATCAGAGGAGTGTCGCTCTCTGAGATTTGTGACCTCAAGTTGCTGCAGCATGTTAAACGTTTTCCCGTTTTTACAGATTGAATGTGACTACTTTGCCAGCGGTGTGTGCTGCGATGCTCTCTGTCTGTCTGGATGATTCACAAGAGGATTCCTCGTGACTGCGTAGGTATTAATCTTCTACTAGTGCTTTCAGCGCTGCCTCTGGCAGTCTGGAGTGTAGAAAAATAGAATGCTAGTTACAAACATAACTGTGGTTCTATGACTAAGTGGAAGACCGCCAGAGTCTCCAGTCACTCGGTAGATTTCAGAGAGGCTAGCAATAGCGAGCTAGCTTTGAAAGCATAAGGTCCCACCCTCCCTTCTAAAGCCATACCTCTTCCAAAGCACATGGATGCGTACAGCAGGGAGCAAACAAAAGCGTCACAAGAGACTGAGTTAAACTACCTCATGTCTCAAAGCACATAACATTACAATAATACTAAACAATAACAACTTAAAGAGCACTGACCTGTACCACCTGACTGCTGCAGTTTCATTTTGCCGTTGATAGTGTTGCCACTGAAATGCATAAATTCGAGTCATGGACCACTCTGAGTAAAACGTCACAAATTTCCATCTCTTCCAAATTATGGTAGTTATGGCGTGAACGCAGCATAAGCTCAATGTTTTGGTTCAGGAGGGACTGTAAAAGGTGGCTGCTGTTTCGGTTGAGGTGCTCAGTGACTGACGTCTGTCTAACTCTGCATAGCATGAAACACACTGATGACGTGTGATGTCTGCCCAATCAGATAGGTATGAAAATACATGTCACACCAGTGCGACTGACCCATTCAGGCCCAGTTCTATAGGGGTGCTAGGGGATGCTCCCTCAGCTGAAACTATTAATAGCATATTAGTGAAACAGATTTGGTAAACGATCCAGATTATTTGTGTTTGCATTCTGGAGAGCGTCAAAGATTTCTATTTGCCACATTTTGTTCATAAAGACAGTCACTTGCTTCTTTCCCGAATGAATCAGCCATTTTGAACGAATTGATTAAATAAACGATTCAGTGACAAAGAAAAAAACATTCTATATGAATATAGATAGTAAGAATGAAATTCATATATACTACATCCGCCATGTTGTTATCATCACGTAACCTACCGGCATCAGTTGTGTGGCTTTATTGCCATTCACAAATGCTCTCCCATGGCATCATGGGATAGTAAAGTGTCCAACGAATGCACACTTCAGAAACTTGTCTGAGGTAAAAGCAAAGTTAAGTGACATTATTGTTAACAAGCTGTTTTACTGACATGTTTCCGCGGTTGAAACACTGATTGAGCGACTACACGAGACATACATTTCGGTAAGCTGTACTGTATCTTTCAACATACCTTTTGATGTTCCAGAATTTTTTTCGTTTTAACTTGTAAAGAAGTGGAAGAGATGACTCGCGCTGAGGCGCTACAGTAATCTGTCGCATAACATTTAAGAGCGTCAGAACTCCATTGTTGTTTGTTTGAATTTTGAGATAAAATGGACAGAATTTAAAGCGGAGACTTTGTTTCTTACCAGAATTAACAAAGCACAACCCTTTTTGTGATTGTTAGATCGGAGGCGCACTACAAGTGTTTGGTGTGTAGGGAATATAGGCTATATTAAAATGTTTAGTGTAGGGGAAAACCGCGGACCTGGCAACCCTGGCTTGAACTACGGGTGATTCATAGGGTCAAACAGAGCCTGCTTATACGTTGCTATTTTTAATGCGTCATTGTCGCGTTAACTTCGACAGCCTTAAATTCAACACGAGACGTTTTGTTAACACACAGTCTGTGAAA

Function

NR:

description
reverse transcriptase/ribonuclease H/putative methyltransferase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_12854692_12859028.mRNA True 3660 mRNA 0.44 3 12854193 12861031

Neighbor

gene id symbol gene type direction distance location
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 200336 12646484 ~ 12653857 (+)
CI01000009_12504532_12504815 NA coding upstream 349299 12504380 ~ 12504894 (+)
CI01000009_12432736_12435509 NA coding upstream 418302 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 463528 12385222 ~ 12390665 (+)
CI01000009_12351325_12366549 PCBP3 coding upstream 487596 12351325 ~ 12366597 (+)
CI01000009_13194613_13197758 NA coding downstream 333406 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 531275 13392306 ~ 13476807 (+)
CI01000009_13549003_13580198 ITGA4 coding downstream 687972 13549003 ~ 13580233 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 835494 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 891393 13752424 ~ 13753823 (+)
G57756 NA non-coding upstream 259448 12528533 ~ 12594745 (+)
G57911 NA non-coding upstream 372161 12481744 ~ 12482032 (+)
G57903 NA non-coding upstream 379663 12473935 ~ 12474530 (+)
G57900 NA non-coding upstream 383589 12470282 ~ 12470604 (+)
G57896 NA non-coding upstream 391241 12462546 ~ 12462952 (+)
G57739 NA non-coding downstream 62962 12923993 ~ 12926242 (+)
G58005 NA non-coding downstream 179295 13040326 ~ 13047175 (+)
G58004 NA non-coding downstream 180782 13041813 ~ 13061580 (+)
G58023 NA non-coding downstream 262146 13123177 ~ 13124892 (+)
G58088 NA non-coding downstream 363809 13224840 ~ 13225681 (+)
G57811 NA other upstream 918942 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 1087249 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2997606 9853929 ~ 9856587 (+)
G56100 NA other upstream 3723907 9129300 ~ 9130286 (+)
G57691 NA other downstream 45413 12906444 ~ 12918465 (+)
G57701 NA other downstream 145612 13006643 ~ 13023138 (+)
G58028 NA other downstream 279347 13140378 ~ 13143608 (+)
G58382 NA other downstream 1172528 14039757 ~ 14039901 (+)
G58455 NA other downstream 1385664 14246695 ~ 14258526 (+)

Expression


Co-expression Network