CI01000009_13884165_13939556 (NCKAP1)


Basic Information

Item Value
gene id CI01000009_13884165_13939556
gene name NCKAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13883847 ~ 13939688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_13884165_13939556.mRNA
CTATAAAATTCATAGAAAAGAATTAAGAGTCAATAACAACATCGTTGCAACAACTACTATCATCAGCATGATGGGGGCGGAGGTTCTGCGGAGTGCTCTGGTCACATGACGCAGTGACGTCGTTGCCGGAAGCAGCCTCGTTCTGGCCGTCAGGGCAACACCTAGAAAAAAAAATACATCCCCGACGACGCGCCTGAAGCCCCTAATATGGGCGAATTTTAACACTAAAAACCAACTCGTTTCGGCACTTTACCCTTTAACACTACAAGAGGAATCCGGTCGGTTGTGATTTAGCTCGTTTTAACGGTCGTTTGAGCCATGTCTCGGGGCGCGCTGCAGCCGAGCCAGCAGAAGCTGGCGGAGAAACTGACGATCCTCAACGACCGCGGCATCGGGATGCTCACGCGCATCTACAACATCAAGAAGTTTAAGCATAGAATGATAACTGACTTTGTTTTAAACACAAGTTGTATTAAATGCAGTTTGGAGTTTGTTGGATTTCGCTGCGGGTATATAGTGTGTTTAGCTCGACATGAAATCCTCAGAGACCCCTTTTCCACCAACAGAGTCCTGGTGCCAAAGCCAGTGCCCAAAGCAGGAGCCATTCTGTGCACTTCCACCGAAGACCAGACAAATGGGCTCCTCAGCCAGCAGATTATCTCTTCAACATTCTGGCCTTTCTCTTTTTTATTTCATCCACTGCATTTTCTAACTGTGATCAAATCCCTGCACTTTACCTCACTGTTCATCCTCTCTGATCTGTCTCAAATGGCCTGTGGAGATCCCAAGGCAAAACCTTCCTACCTAATTGACAAAAACCTGGAGTCAGCCGTGAAATTCATCGTCAGAAAATTCCCAGCCGTTGAGACGCGCAACAACAACCAACAGCTTGCACAACTACAAAAAGAAAAATCAGAAATACTGAAGAATCTAGCACTATATTACTTCACCTTTGTGGACGTTATGGAATTTAAGGACCACGTTTGTGAACTGCTGAACACTATTGATGTCTGTCAAGTTTTCTTTGACATTACTGTAAATTTTGACCTCACAAGGAACTACCTGGATTTGGTGGTGACGTACACTACCCTGATGATGCTGCTTTCTCGAATTGAGGAGCGCAAAGCGATAATCGGCCTGTACAACTATGCCCACGAAATGACACACGGTTCAAGTGATCGAGAATACCCCAGGCTTGGACAGATGATTGTGGACTATGAAAACCCATTGAAAAAGATGATGGAGGAGTTTGTTCCTCATGGAAAATCGCTGTCAGATGCACTGGTCTCCCTGCAGATGGTCTACCCACGCCGGAATCTGTCTGCAGATCAGTGGAGGAACGCTCAGCTCCTCAGTTTGATTAGTGCTCCTAGCACCATGCTCAACCCGGCTCAATCCGACACGATGCCCTGTGAATACCTATCCTTGGACACCATGGAGAAATGGATCGTCTTCGGGTTCATCTTGTGTCATGCGGCTCTGAACAGTGACCCTGCGGCTCTCAGTTTGTGGAAGTTGGCTCTTCAGAGCAGTTCCTGTCTCTGTCTATTCAGGGACGAGGTCTTCCACATTCACAAAGCTGCCGAGGATCTCTTTGTAAACATTCGCGGTTACAACAAACGTGTCAATGACATCCGCGAATGCAAGGAGTCTGCTCTGTCACATGCGGGCTCCATGCACAGAGAACGGCGCAAGTTCTTGAGGTCTGCCCTAAAAGAGCTCGCCACAGTTCTAGCGGATCAGCCAGGTTTACTGGGTCCCAAGGCTCTGTTTGTGTTCATGGCTCTCTCTTTCGCCCGTGATGAGATCATTTGGCTGCTCAGACATGCCGACAACATTCAGAAGAAAAGCACAGATGACTTCATTGACAAGCACATTGCAGAGCTGATCTTTTACATGGAGGAGTTGAGGGCACATGTACGGAAGTATGGCCCGGTGATGCAGAGATACTACGTGCAGTACCTATCTGGCTTTGACGCTGTGGTGCTCAATGAGCTTGTGCAGAACCTGTCCGTCTGCCCAGAGGATGAATCCATTATCATGTCATCTTTCGTGAACACTATGACCTCTCTCAGTGTTAAACAAGTTGAAGATGGTGAAGTGTTTGATTTCAGAGGGATGAGGCTAGACTGGTTTAGACTGCAGCCAGAGTCCTCTCTTTCACATGGCCACAAAAACAAATCGACCCCACTAACAGCAGCGTTTATTCACTGCGCAGCCTTGAGCTCAGACTGCTCTCAGTTTGCCAGGACAAAGCAAATTCATGGATTTAAACAGTCAGCTATAGAGCAACTGAGTGTGTGTGAGGCTGTTGACAGATGTGGGTGCGGTCCTTTTTATCGCTATGGCCGATTAAACTACCAGCAGCAGTCTGCAAATGTTCATCTAAAAATAAGCCCTGTTTTCAATACTTTTTCTGGTCCACAGTGGACTTCAGTGCTGTACGATATGTTTATTGTCGTTCCCCGGACTCCAGAACCACAAGCTTTTCTTCATTTGATCATGTATGCTAGAGAGGAAATTGTGTTGGTTGGACATTGTCTGGTTCAACAGTATCAAGTTTACAAAAATATTTCCCAGAAAGCCTTCTCAGAAGTTAATGATATGGCTTACACCAGTGTGTCCAAGGCCTCACTAGGACTGGCAGATCACAGGGAGTTGGGAAAGATGATGAACACCATCATCTTCCACACCAAGATGGTGGACTCTCTGGTGGAGATGCTTGTGGAGACTTCTGACCTTTCCATTTTCTGCTTTTACAGCCGAGCCTTTGAAAAGATGTTCCAGCAGTGTCTCGAACTGCCGTCCCAGTCTCGATACTCCATCTCCTTCCCTCTGCTCTGCACCCACTTTATGAGCTGCACCCATGAGCTCTGCCCTGAAGAGCATGTCTCTGAAATGGTCTTCCTCCTATGTCCACTCCACACAGCTTTGGACAGCTGCAAGCTTTATTTATGTTGGAAAAGCACTAAAAGTTTCCAAGAATATTTCCATCCTCGCACAGAAAACTTTTTACAGCGGTTTAGAGAAACAACAAAAGATCACGGCGCTTCAGCAGAGAGGCACCACATTGGAGACCGCAGCCTGTCCCTTTGCAACATGTTCCTGGACGAGATGGCCAAGCAAGCCCGCAACCTCATCACAGACATATGCACAGAGCAGTGCACCCTGAGCGACCAGCTACTGCCAAAACATTGTGCCAAAACCATCAGTCAGGCCGTGAACAAGAAGTCGAAAAAGCAGACTGGGAAGAAGGGTGAACCGGAGAGAGAGAAACCTGGTGTTGAGAGCATGAGGAAGAATAGACTCCTGGTCACCAATCTGGACAAACTGCACACTGCCCTCTCAGAGCTCTGCTTCTCCATTAACTACGTCCCTAACATGATGGTCTGGGAGCACACCTTCACCCCACGCGAGTACCTGACCTCCCACCTGGAGATCCGCTTCACTAAGTCCATAGTTGGGATGACCATGTACAACCAGGCCACACAGGAGATCGCCAAACCATCAGAGCTGCTCACCAGCGTGCGGGCCTACATGACAGTGCTGCAGTCCATTGAGAATTATGTGCAGATTGACATCACCAGAGTGTTTAACAACGTGCTGCTGCAGCAGACCCAACACCTGGACAGCCATGGAGAACCAACCATCACCAGCCTCTACACCAACTGGTATCTGGAGACTTTACTGCGGCAGGTTAGCAATGGTCACATCGCTTACTTTCCTGCCATGAAGGCCTTCGTCAACTTGCCCACAGAGAATGAGCTCACCTTCAATGCAGAGGAGTATTCCGACATATCTGAAATGCGCTCGCTGTCTGAGCTGCTGGGTCCATACGGGATGAAGTTCCTCAGCGAGAGCCTCATGTGGCACATCTCTTCCCAGGTGGCCGAACTCAAGAAACTTGTGGTGGACAATGTGGAGGTTCTTACCCAGATGAGGACCAGTTTCGACAAGCCGGACCATATGGCAGCACTCTTTAAGCGGCTCACATCGGTTGACAGCGTGCTGAAACGGATGACCATCATCGGCGTGATTTTGTCGTTTCGCTCTCTGGCTCAGGAAGCTCTCAGAGATGTGCTGTCCTGCCACATTCCCTTCCTGGTGAGCTCCGTGGAAGACTTCAAAGACCACATTCCTCGTGAAACTGACATGAAGGTGGCCATGAACGTGTATGAGCTGTCTTCTGCCGCAGGCCTGCCCTGTGAGATCGACCCTGCTCTGGTTGTGGCTCTGTCTTCCCAGAAGTCTGAAAATATTAGCCCAGAGGAAGAGTACAAGATCGCCTGCCTGTTGATGGTCTTCGTGGCCGTTTCCATGCCGACCCTGGCCAGCAACGTGATGTCACAGTACAGTCCCGCAATAGAAGGTCACTGCAACAACATTCACTGTCTGGCTAAAGCGATAAACCAGATTGCCGCTGCGCTGTTCACTATCCACAAGGGCAGCATAGAGGATCGCCTGAAAGAGTTTCTTGCCCTCGCCTCCTCCAGCCTGCTGAAGATTGGACAGGAGACGGATAAAACCACTACACGAAACAGGGAGTCTGTTTACCTGCTTCTGGACATGATCGTTCAAGAATCACCATTCCTCACCATGGACCTCTTGGAATCCTGCTTCCCATATGTCCTGCTCCGGAATGCCTACCATGCCGTATACAAGCAGTCTGTGTCTTCATCCGCGTAAGAGTTCCTGTGTGAAGAGCACTCGAGGGGCGGATACTTCAACCCTCATTCCATATTCCTCTGTAGGATTCTCCAATGTTATAGTCTTACCAGTTCAAGACTTTTAATGGGATCAAATCTTTTATAACACTGA

Function

symbol description
nckap1 Acts upstream of or within neuron projection morphogenesis. Predicted to be located in lamellipodium membrane. Predicted to be integral component of membrane. Orthologous to human NCKAP1 (NCK associated protein 1).

GO:

id name namespace
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis biological_process

KEGG:

id description
K05750 NCKAP1, NAP125; NCK-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_13884165_13939556.mRNA True 4818 mRNA 0.49 37 13883847 13939688

Neighbor

gene id symbol gene type direction distance location
CI01000009_13811227_13837798 NA coding upstream 45452 13811076 ~ 13838395 (+)
CI01000009_13798741_13799037 NA coding upstream 84656 13796884 ~ 13799191 (+)
CI01000009_13752424_13753460 NA coding upstream 130024 13752424 ~ 13753823 (+)
CI01000009_13696525_13718933 SSFA2 coding upstream 164914 13696525 ~ 13718933 (+)
CI01000009_13549003_13580198 ITGA4 coding upstream 303614 13549003 ~ 13580233 (+)
CI01000009_13942733_13946356 FRZB coding downstream 2833 13942521 ~ 13946405 (+)
CI01000009_14007631_14010487 NA coding downstream 67399 14007087 ~ 14010693 (+)
CI01000009_14033666_14036472 RETSATL coding downstream 93978 14033559 ~ 14036472 (+)
CI01000009_14039505_14043545 RETSATL coding downstream 99521 14039209 ~ 14043609 (+)
CI01000009_14095330_14128580 NA coding downstream 153957 14093645 ~ 14128582 (+)
G58310 NA non-coding upstream 47968 13833541 ~ 13835879 (+)
G58301 NA non-coding upstream 135024 13745821 ~ 13748823 (+)
G58307 NA non-coding upstream 237451 13637284 ~ 13646396 (+)
G58252 NA non-coding upstream 298591 13523613 ~ 13585256 (+)
G58205 NA non-coding upstream 497650 13385986 ~ 13386197 (+)
G58389 NA non-coding downstream 35700 13975388 ~ 13978604 (+)
G58388 NA non-coding downstream 57137 13996825 ~ 14004082 (+)
G58384 NA non-coding downstream 72217 14011905 ~ 14018473 (+)
G58421 NA non-coding downstream 111289 14050977 ~ 14051404 (+)
G58467 NA non-coding downstream 157803 14097491 ~ 14097703 (+)
G58028 NA other upstream 740239 13140378 ~ 13143608 (+)
G57701 NA other upstream 860709 13006643 ~ 13023138 (+)
G57691 NA other upstream 965382 12906444 ~ 12918465 (+)
G57682 NA other upstream 991508 12825469 ~ 12892339 (+)
CI01000009_12432736_12435509 NA other upstream 1447830 12432538 ~ 12436017 (+)
G58382 NA other downstream 93871 14039757 ~ 14039901 (+)
G58455 NA other downstream 307007 14246695 ~ 14258526 (+)
G58558 NA other downstream 557248 14496936 ~ 14501514 (+)
G58649 NA other downstream 710036 14649724 ~ 14652022 (+)
G58711 NA other downstream 826971 14766659 ~ 14773773 (+)

Expression


Co-expression Network