G51354


Basic Information

Item Value
gene id G51354
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2415700 ~ 2425283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58515
AGACAGGTCTCGGGGTCGGCAGTGCATGGGCTGGATGGGGCTGCATGTCGACCGGTCCGAGTGCCTGGACCCCTTGGATTTAAACGACTCAACCAACTCATCTTAGCTCACAGGCTGATCCAAATTCAATAAAGAGGTCAACAGGGAAAGAATAAAGGGGGAGAGAGGGAGTAGTGTAGAGAGGGAGAGAAAAGGGAAAAAGGGGGGAGGGGGGGTAAGGTAACTCACAAAAGGTGTCCAAAAATCAAGAAATGAAGAGTCCAGCTTTATGAAATAAAGAGGTAAAAGCATAGAGAGGATGGAATCCTGCTGATGTCTGCAGCAACAGTCACTGTACACCAGTGATCAGTGTGTGAGCATGTGCGGCTTGTCTGCGCTCCCTGTCATCCAGTTTGCTATCGGCACTATACTCCATACCGATGCATAGACTCCTCCACACACACACGAGCGAGTGCTGTTTTCCGTTTCGTCTTCTGCCGTAACCTGTCTATCCTCAAACAGTGAATCTGAGATTTGTCAACCTCTCCCTTCGTCCCGC

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58515 True 538 lncRNA 0.50 2 2415700 2425283

Neighbor

gene id symbol gene type direction distance location
CI01000009_02398010_02399639 NA coding upstream 15948 2396065 ~ 2399752 (+)
CI01000009_02375481_02385887 NA coding upstream 29699 2375076 ~ 2386001 (+)
CI01000009_02284485_02285584 NA coding upstream 129571 2284485 ~ 2286129 (+)
CI01000009_02233367_02235148 RABL3 coding upstream 179907 2233367 ~ 2235793 (+)
CI01000009_02028234_02100154 PLCL1 coding upstream 315546 2028234 ~ 2100154 (+)
CI01000009_02426085_02433745 CNGA4 coding downstream 292 2425575 ~ 2433795 (+)
CI01000009_02449805_02450173 NHLH2 coding downstream 22714 2447997 ~ 2450356 (+)
CI01000009_02479541_02488142 VANGL1 coding downstream 54258 2479541 ~ 2488759 (+)
CI01000009_02499173_02519062 DOPEY2 coding downstream 73686 2498969 ~ 2519155 (+)
CI01000009_02572388_02587828 USP9, USP9X coding downstream 147105 2572388 ~ 2588051 (+)
G51272 NA non-coding upstream 14333 2401033 ~ 2401367 (+)
G51270 NA non-coding upstream 14806 2399778 ~ 2400894 (+)
G51358 NA non-coding upstream 47286 2368182 ~ 2368414 (+)
G51265 NA non-coding upstream 52529 2242709 ~ 2363171 (+)
G51347 NA non-coding upstream 91843 2323267 ~ 2323857 (+)
G51368 NA non-coding downstream 2839 2428122 ~ 2428322 (+)
G51384 NA non-coding downstream 129456 2554739 ~ 2621187 (+)
G51394 NA non-coding downstream 206494 2631777 ~ 2633862 (+)
G51470 NA non-coding downstream 397679 2822962 ~ 2823706 (+)
G51388 NA non-coding downstream 415127 2840410 ~ 2844319 (+)
G51274 NA other upstream 65214 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 514274 1897343 ~ 1919516 (+)
G51122 NA other upstream 733734 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 977345 1429873 ~ 1435328 (+)
G50920 NA other upstream 1645467 769841 ~ 770233 (+)
G51529 NA other downstream 636750 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 777489 3202207 ~ 3208984 (+)
G53388 NA other downstream 3096959 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3435019 5931718 ~ 5943899 (+)
G53651 NA other downstream 3820281 6245564 ~ 6248392 (+)

Expression


Co-expression Network