G51525


Basic Information

Item Value
gene id G51525
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3050909 ~ 3051364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58704
ATTTTGATCCTTCACTTCCACCCAAAAATGAAAATAATGTAATTTATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTCGTTCATCTTCTGAACACAAATTAAGATATTTTTGATAAAATCCGATGGCTCAGTGAGGCCTCCACAGACAGCAAAAGTCACATTATTTCAGCAGTTTGGTAGTTTGACACGCGATCCGAATCACTGATTCAAAACAAAAGATTTGAAGAAGTGTTTTGAAATCGGCCGTCACTAGATGTCGTTGAAAAGTCATTATTTAGTTTTTTTTTGGCGCACAAAAAGTATTCTCGTCACTTTATAATATTAAGGTAGAAACACTGTATTCAAATCAACTGTTTTAAATATGTGTTAGTAGCTTTCTGGGCATCTGAAAGTGTTAATTCTCTTGCTGGCAATGCAGGCCTCACTGAGCCATCGGATTTCATCAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58704 True 456 lncRNA 0.39 1 3050909 3051364

Neighbor

gene id symbol gene type direction distance location
CI01000009_02918681_02973307 KDM6A coding upstream 76957 2918681 ~ 2973952 (+)
CI01000009_02799246_02827589 NA coding upstream 223269 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 336911 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 372163 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 381745 2667442 ~ 2669164 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 70752 3122116 ~ 3138311 (+)
CI01000009_03145417_03159851 F5 coding downstream 94053 3145417 ~ 3159914 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 110954 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 150843 3202207 ~ 3208984 (+)
CI01000009_03211734_03220047 NXPE3 coding downstream 160370 3211734 ~ 3222297 (+)
G51523 NA non-coding upstream 801 3049792 ~ 3050108 (+)
G51522 NA non-coding upstream 3810 3046149 ~ 3047099 (+)
G51514 NA non-coding upstream 49001 3001610 ~ 3001908 (+)
G51510 NA non-coding upstream 52494 2997879 ~ 2998415 (+)
G51508 NA non-coding upstream 61670 2988908 ~ 2989239 (+)
G51527 NA non-coding downstream 2968 3054332 ~ 3055012 (+)
G51531 NA non-coding downstream 12836 3064200 ~ 3064432 (+)
G51537 NA non-coding downstream 24778 3076142 ~ 3076380 (+)
G51539 NA non-coding downstream 30565 3081929 ~ 3082410 (+)
G51553 NA non-coding downstream 56362 3107726 ~ 3108011 (+)
G51274 NA other upstream 700423 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1149483 1897343 ~ 1919516 (+)
G51122 NA other upstream 1368943 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1612554 1429873 ~ 1435328 (+)
G50920 NA other upstream 2280676 769841 ~ 770233 (+)
G51529 NA other downstream 10669 3062033 ~ 3062587 (+)
G53388 NA other downstream 2470878 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2808938 5931718 ~ 5943899 (+)
G53651 NA other downstream 3194200 6245564 ~ 6248392 (+)

Expression


Co-expression Network