G51610


Basic Information

Item Value
gene id G51610
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3119464 ~ 3149432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58800
GCTCTGTATCCACCTTATTCCTACGCCCCATGACGCTTTGCGCCAATTTTGGGTGTAACTTCCGTTAAGCTGTAAACAGTCAGTGAAAGGCTCGCTCTATGAGCGCAATAATACGTTTTTTTTTTGTTTGTTTTTTTGCTTTTTAAATGTTAAACCATAGAGATTTTATTTTAGCAGAAAACCGCAGCTTTTGCTTTTTTGACAACTCAAAGGCGTGATTCTCATTTCATTTCCCGTGAATCCTTGCAGATCTATTATGGATTTTAAATGATGATTTTTGCAGAAACCTAATCATTCAGGCAGTTTTGAGGATTGACAACCGCATTTACTTACAGATGTACACCTCGAAATGTCTCGTGCACACAACCTACAGTAGCGTCTGGAATAGGCCTACTACTGTCTGTATGAACTTCTTGTATGAAGTCGAATTCATCTGTCATATCTTCATTAACCGACAGCAGCTTTTATATCTGGGTGGATAGAGGAGCATTTTAGTTGCGTAAAACACAAAACATGAGCAGCTCCGTTGGAGAACAGTGACTAGATGTGAATCTAAAACTTTCAGATGACACACAGCTCATATCTCTGTCACTGTAAGCTGCACACGAAAACCCGCAATACAAAGAAGATGAGTGTTTCTCTCTGTGTGACAGACAACTAGTTGTCCAGTCTGGTTCCGTTCACATTTTTCATAATGCGATTCTAAAGGCCCATTCACACCAAGAATGATAACTATAAAGATAATGATAAAGATATAGTTTTAAAAATCATTCTAAATATAAAAGAATAGCAGAGTCCACACCACAGCTATAACGATAACGATAACGATATAGAGAAACGATATTGTTGGGATCACTTTCAGAGTGATTTTTTTCCCAGCTGTTGAACGATAAAACACTGACAGCCAATCAGAATCCATTCTAATTTAAGGGCTCGCGCATTTAAAATGGCAGACGACACTGCGGAGTTAGTCGCCGAGGTCCAGAAAAAGCCACCACTGTTTGACAAATCAAACCCCCTTTTTCAAGGCTACTTTAAAGAAAATGGATGTATGGAAAACAATAAATGGTGAGAAGTATTAACGATATATGCCAGGCTAGCAATTGCAACAATTACAGTGTAACAATTACCTCAGGTATCCAGCGCTAGTTTCAACATCATTGTCTTCCTTCTTTTGACGTTGCAGTGAAAAAGACTAGGCGTTGTTTTTATTCCACTATATTGACTTCGTTAGCTAAATTCACTGTTAGATTAGATCGATTGCACTAGCTATTCACTCGAAACATAACATGCTGAGGATACCTGCTGGTTAAAGCCGTGTAAATGCAACAAGAACAGCAAAAACAATGTACACACTTTGAAACCGTAGCGCGTGAGCTTAGACAGACCGTTATCGTTCATTGGTGTGGACGCAAATATAATTATCGTTATAGTAATCTTTAAAGATATCGTTCTTGGTGTGAACGGGCCTAAAAGGATTAGTCCACTTTCAAATAAAAATTTCCTGATAATTTACTCACACCCATGTCATCCAAGATGTCCATGTCCTTCTTTTTTCAGTCGAAAAGAACTTAAGGTTTTTGATGAAAACATTCCAGGATTATTCTCCTTATAGTTGACTTCAATGGTCTCCAAACGGTTGAAGGTCAAAATTACAGTTTCAGTGCAGCTTCAAACTGCTTTAAACGATACCAGACGAGGAATAAGGGTCTTATCTAGCGAAACGAAATGCGAAATGATCGGTCATTTTCTAAAAAAAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58800 True 1766 lncRNA 0.49 2 3119464 3149432

Neighbor

gene id symbol gene type direction distance location
CI01000009_02918681_02973307 KDM6A coding upstream 145512 2918681 ~ 2973952 (+)
CI01000009_02799246_02827589 NA coding upstream 291824 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 405466 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 440718 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 450300 2667442 ~ 2669164 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 12886 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 52775 3202207 ~ 3208984 (+)
CI01000009_03211734_03220047 NXPE3 coding downstream 62302 3211734 ~ 3222297 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding downstream 127140 3276572 ~ 3284006 (+)
CI01000009_03301176_03305406 LAMP1 coding downstream 151744 3301176 ~ 3305595 (+)
G51559 NA non-coding upstream 444 3118793 ~ 3119020 (+)
G51558 NA non-coding upstream 1108 3117858 ~ 3118356 (+)
G51552 NA non-coding upstream 10552 3108463 ~ 3108912 (+)
G51553 NA non-coding upstream 11453 3107726 ~ 3108011 (+)
G51539 NA non-coding upstream 37054 3081929 ~ 3082410 (+)
G51589 NA non-coding downstream 73327 3222759 ~ 3223865 (+)
G51581 NA non-coding downstream 111765 3261197 ~ 3262009 (+)
G51585 NA non-coding downstream 112904 3262336 ~ 3262959 (+)
G51569 NA non-coding downstream 137896 3287328 ~ 3290810 (+)
G51529 NA other upstream 56877 3062033 ~ 3062587 (+)
G51274 NA other upstream 768978 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1218038 1897343 ~ 1919516 (+)
G51122 NA other upstream 1437498 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1681109 1429873 ~ 1435328 (+)
G53388 NA other downstream 2372810 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2710870 5931718 ~ 5943899 (+)
G53651 NA other downstream 3096132 6245564 ~ 6248392 (+)
G56100 NA other downstream 5979868 9129300 ~ 9130286 (+)

Expression


Co-expression Network