G51659


Basic Information

Item Value
gene id G51659
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3427566 ~ 3427773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58849
TTCCAACCCATATTTTTTGTTCCCCATCAAACGGCACATCATTTCTTTGGACCTGCAACTGTCTGTTATTAATAGTTTTATGATTTATAGGCAGAGGCTGGATGCAGCTCTGAACAGCCACATATACAATTATCCAATGTTCAGCCTATATGAATGCCATTTTCCTGCTGATCTCTACCTAAAAAAGACAAGACCATTTGTCTCTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58849 True 208 lncRNA 0.38 1 3427566 3427773

Neighbor

gene id symbol gene type direction distance location
CI01000009_03335503_03355421 NA coding upstream 72140 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 94113 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 98056 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 121971 3301176 ~ 3305595 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding upstream 143560 3276572 ~ 3284006 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding downstream 39080 3466853 ~ 3473414 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 223111 3650884 ~ 3661357 (+)
CI01000009_03680266_03685634 NA coding downstream 252493 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 261557 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 295637 3723410 ~ 3727389 (+)
G51639 NA non-coding upstream 116097 3310954 ~ 3311469 (+)
G51638 NA non-coding upstream 118029 3309078 ~ 3309537 (+)
G51637 NA non-coding upstream 118807 3308526 ~ 3308759 (+)
G51569 NA non-coding upstream 136756 3287328 ~ 3290810 (+)
G51585 NA non-coding upstream 164607 3262336 ~ 3262959 (+)
G51673 NA non-coding downstream 167531 3595304 ~ 3599012 (+)
G51734 NA non-coding downstream 182462 3610235 ~ 3610474 (+)
G51735 NA non-coding downstream 182707 3610480 ~ 3610852 (+)
G51736 NA non-coding downstream 183305 3611078 ~ 3611277 (+)
G51695 NA non-coding downstream 184421 3612194 ~ 3612467 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 218582 3202207 ~ 3208984 (+)
G51529 NA other upstream 364979 3062033 ~ 3062587 (+)
G51274 NA other upstream 1077080 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1526140 1897343 ~ 1919516 (+)
G51122 NA other upstream 1745600 1680146 ~ 1681966 (+)
G53388 NA other downstream 2094469 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2432529 5931718 ~ 5943899 (+)
G53651 NA other downstream 2817791 6245564 ~ 6248392 (+)
G56100 NA other downstream 5701527 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6425586 9853929 ~ 9856587 (+)

Expression


Co-expression Network